Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2386 ATGCTAGTGATTGGACAAAGCTTGCAAGAAACAACCTTGGATGAAACTCAAAACCCAAATGGTTTTGTTGAGGTTAATGATGAAAGGCTTCATCAAAAACTGAACAACAGAATGTTGAGAATTATTTCCAACATGTTCAAACCTCAGAGACTGATTTCACATTTTTTACAGGAAAATCTTATGAATCCTTTCAAGAATGCTATTTTTTCCAAGAAGATTGATTGGTCATGTATTAGCACAACTTGCAAGCAATGGATCAAGAATCCTTTGAACATGGCACTTCTTCTATGGATAACTTGTGTCATCATCTCCGGCGCGATTCTCTTCCTAGTTATGACAGGAATGCTAAACAGAATCCTCACCAAGAAATCCCAAAGAGATGAATGGTTTGAAGCAAACAACCAAATCCTCAATGCTCTATTCACTCTCATGTGTCTATACCAACATCCGAAGAGATTCTACCATCTTGTTCTTCTTCTTAGGTGGAAACAAGAAGACATAACAATCCTCAGAAACTTGTATTGCAAGAATGGAAATCCCAAGCCTCATGAATTTTTCCACATGATGGTTGTTATTGTGTTACTCCATGTTAATTGCTTTGCTCAATATGCATTATGCAGCCTTAATTTAGGGTTCGACCGGTCTAAAAGGCCGGCCGTTGCAGTTGGTATATGCATCTCAATCGCAATTGCTGCTCCGATTTTCACAGGACTATACTGCTTTGTTAGCCCTCTAGGCAAGGAATATGAATCTGATGAAGTATATTGTTCAACCGGTTCAAGATTACCGTCCGAAACGAGCTTTTCTTTTGCATCAAGAAATGATCATGGCCTTGTTGTTATTGAGTATGCACCTGAATGGAGAGGAGGACTATTTGATCTTAAGCAAAATCTTTCTGTTGCATACCAAACACTCTTCTGTGGTTTTTGCACTTTTGGAAGGAACATGAAAAGGCTTCACTTTGGTAACATTTATGTTCACATTTCAACTTTTTTTCTATTTTGTATGGCACCCTTTTGCATCTTTAATCTTGCTGCATTGCACATTGATGATGAGAATCTAAGAAGAATCATGGGGTTCATTGGTATATTGCTTTCAGTTTTTGGTTTACTCTATGGTGGATATTGGAGGATTCAAATGAGGAGAAGATTCAATTTGCCACCAAATAATAATAATAAACTTTGTTGTGGGAATCAAAATGTTAGTGATTGCATGCAATGGCTATTCTGTTGTTGGTGTTCTCTTGCACAAGAAGTTAGAACAGTGGAATTCTATGACATAGTTGAAGATGAATTTTCATGCAAAAGTCAGAATCATGAAATGTTCAATTCTTCTTCACTTTGGAGCAGTCCTAGTTTGTCTAATAAGGTTTGGTCTGAAGAGAAACAGAAAAATCATGTTATGGAGGCTCCAATTGCACTGAGAATTAATGTGGAAGATAGTGTCATTAGAAGAACATGA 1461 0.371 MLVIGQSLQETTLDETQNPNGFVEVNDERLHQKLNNRMLRIISNMFKPQRLISHFLQENLMNPFKNAIFSKKIDWSCISTTCKQWIKNPLNMALLLWITCVIISGAILFLVMTGMLNRILTKKSQRDEWFEANNQILNALFTLMCLYQHPKRFYHLVLLLRWKQEDITILRNLYCKNGNPKPHEFFHMMVVIVLLHVNCFAQYALCSLNLGFDRSKRPAVAVGICISIAIAAPIFTGLYCFVSPLGKEYESDEVYCSTGSRLPSETSFSFASRNDHGLVVIEYAPEWRGGLFDLKQNLSVAYQTLFCGFCTFGRNMKRLHFGNIYVHISTFFLFCMAPFCIFNLAALHIDDENLRRIMGFIGILLSVFGLLYGGYWRIQMRRRFNLPPNNNNKLCCGNQNVSDCMQWLFCCWCSLAQEVRTVEFYDIVEDEFSCKSQNHEMFNSSSLWSSPSLSNKVWSEEKQKNHVMEAPIALRINVEDSVIRRT* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2386 486 PANTHER PLAC8 FAMILY PROTEIN-RELATED 58 470 - -
Amo12g2386 486 TIGRFAM A_thal_Cys_rich: uncharacterized Cys-rich domain 286 423 IPR006461 -
Amo12g2386 486 Pfam Protein of unknown function (DUF2985) 84 162 IPR021369 -
Amo12g2386 486 PANTHER - 58 470 - -
Amo12g2386 486 Pfam PLAC8 family 287 420 IPR006461 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2386 Amo-Chr12 106088737 106090197 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2386 - - aip:107625841 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2386 12 106088737 106090197 Amo12g2386 12 106088737 106090197 ECH
Amo12g2386 12 106088737 106090197 Amo02g2663 02 83196996 83198456 hybridization