Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2085 ATGATGGAGGCTCGAGTTGGTATAGTAGTAGAAGGTGGGCAGAAAGCCCTTAACGCCGCCCACGGCACCGTAGTCGATGGCGGCGGGGCAGCTAAGTTTCTGCCGCATAATAATCGCCGGAACCAGCAGCAGCAGCAGAATCAACAACAGCGGCAGAAGTCGCAGATAGGAAGCGTTCATCAGCTTCTTGCCGGCGGCATCGCCGGTGCTTTCAGCAAAACCTGCACTGCACCCCTTGCTCGCCTCACTATCCTTTTTCAGATACAAGGTATGCATTCTGATATGGCAACATTGAGCAAGCCTAGCATATGGTTTGAAGCTTCCCGTATTGTCAATGAAGAAGGATTTAGAGCATTTTGGAAAGGCAATATGGTTACCATTGTTCATCGTCTCCCATATTCTGCTGTCAACTTCTATGCCTATGAACACTACAAGAATCTATTACAGTCACTGATTGGTGAGAATCATAGCGGAAATGCTAGTAAAAACCTATTTGTGCACTTTGTGGGTGGTGGTTTAGCAGGTATAACAGCTGCTTCTGCCACATATCCTTTGGATCTTGTGAGAACGCGACTTGCAGCACAGAGAAGTGCTGTATACTATAGGGGCATCTCACATGCTTTCAGTACCATTTGTATGGAAGAAGGTTTCTTTGGTCTGTACAAGGGCCTTGGAGCAACATTGCTGGGTGTTGGGCCCAATATTGCTATTAGTTTTTCTGTTTATGAGGCCTTACGTTCTTTTTGGAAGTCCCAAAGGCCCGATGATTCTACTGTCATGGTCAGTCTTGCTTGTGGAAGTCTTTCAGGAATTGCATCATCGACAGCAACATTTCCTTTAGATCTCGTAAGACGGAGGATGCAATTAGAGGGTGCTGGTGGTCGAGCTCGTGTTTATAACAGTGGTTTGTTTGGGACATTTAGGCGCATAGTTCAAAATGAAGGGTTGCGAGGTCTGTACAGAGGGATTTTGCCCGAGTATTACAAGGTTGTTCCTGGTGTGGGCATTGTCTTTATGACTTATGAGACACTGAAGATGCTTCTAGGAGATATTTGA 1056 0.4621 MMEARVGIVVEGGQKALNAAHGTVVDGGGAAKFLPHNNRRNQQQQQNQQQRQKSQIGSVHQLLAGGIAGAFSKTCTAPLARLTILFQIQGMHSDMATLSKPSIWFEASRIVNEEGFRAFWKGNMVTIVHRLPYSAVNFYAYEHYKNLLQSLIGENHSGNASKNLFVHFVGGGLAGITAASATYPLDLVRTRLAAQRSAVYYRGISHAFSTICMEEGFFGLYKGLGATLLGVGPNIAISFSVYEALRSFWKSQRPDDSTVMVSLACGSLSGIASSTATFPLDLVRRRMQLEGAGGRARVYNSGLFGTFRRIVQNEGLRGLYRGILPEYYKVVPGVGIVFMTYETLKMLLGDI* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2085 351 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 2 349 - -
Amo12g2085 351 Pfam Mitochondrial carrier protein 55 149 IPR018108 -
Amo12g2085 351 Pfam Mitochondrial carrier protein 162 250 IPR018108 -
Amo12g2085 351 Pfam Mitochondrial carrier protein 257 348 IPR018108 -
Amo12g2085 351 ProSiteProfiles Solute carrier (Solcar) repeat profile. 56 147 IPR018108 -
Amo12g2085 351 ProSiteProfiles Solute carrier (Solcar) repeat profile. 257 347 IPR018108 -
Amo12g2085 351 SUPERFAMILY Mitochondrial carrier 55 344 IPR023395 -
Amo12g2085 351 ProSiteProfiles Solute carrier (Solcar) repeat profile. 162 248 IPR018108 -
Amo12g2085 351 PRINTS Mitochondrial carrier protein signature 61 74 IPR002067 GO:0055085
Amo12g2085 351 PRINTS Mitochondrial carrier protein signature 74 88 IPR002067 GO:0055085
Amo12g2085 351 PRINTS Mitochondrial carrier protein signature 122 142 IPR002067 GO:0055085
Amo12g2085 351 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085
Amo12g2085 351 PRINTS Mitochondrial carrier protein signature 221 239 IPR002067 GO:0055085
Amo12g2085 351 PRINTS Mitochondrial carrier protein signature 266 288 IPR002067 GO:0055085
Amo12g2085 351 PANTHER SOLUTE CARRIER FAMILY 25 2 349 - -
Amo12g2085 351 Gene3D Mitochondrial carrier domain 50 349 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2085 Amo-Chr12 97329590 97333886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2085 50 351 Organic Solute Cotransporters AT3G55640 74.587 1.92e-168 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2085 - K14684 twl:120013059 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2085 12 97329590 97333886 Amo12g2085 12 97329590 97333886 ECH
Amo14g2724 14 116197966 116201787 Amo12g2085 12 97329590 97333886 PCT
Amo12g2085 12 97329590 97333886 Amo14g2724 14 116197966 116201787 PCT