Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0923 ATGTCCAACTCTCTCCTTCTTCTTCCTCCTTCTTCCTCTTCTTATTCTCAACCCCATTCACCTCTCACTCTCACTTTCTTTAATTCACGGAGGAAGAGACGCCCTTGCAGATATTCCAGAGCGACAATGTGCTCCTCTCATAATTCCCATCCCCCAAACGACGTCGTTGTTGGGTGTGGAGCGGCGTCGGTGGATTTCTTGGCTACCGTTGCTTCTTACCCTAACCCTGATGACAAAATCAGAAGCATCAACTTGAAGGTTCAAGGAGGTGGAAATGCAGGCAATGCTTTAACTTGTGTTGCTAGATTGGGCCTCAAGCCAAGGATCATCTCCAAAGTAGCAGATGATAGTCAAGGCAGGAGCATACTAGATGAGTTACACGCTGATGGTGTAGATGCATCCTTTATTGTGGTGTCTAAGGAGGGAACTTCACCATTTACATATATTATTGTGGACAACGAAACGAAGACCCGTACTTGCATACATACCCCAGGATATCCTCCAATGATACCACAGGATCTTTCTGAATCAAGTCTGTTAACTGCATTGAATGGAGCAAACATTGTTTACTTTGATGGGAGGTTATATGAAACTGCTCTTGTTGTTGCCCAAGAGGCAGTTAGGAAGAATATACCCATCTTAATTGATGCAGAAAGGCCAAGGGAAGGGTTGGATGATCTCCTGAAATTTGCTAATTATGTTGTATGCTCAGCAAAGTTTCCACTAGCATGGACAGGAGCATCAACTATTCCACAAGCACTTGTTTCTATTCTCTTAAGATTGCCCAACATCAGATTTGTGATTGTGACCTTGGGAAAAGATGGTTGCATAATGCTTGAGAGAAATCTTGATGTGGCCTCTTCCACAGAGGAAGTGGATATAGACAGCTTAGTGGAGTCACTGAAGATGACAACAAATGAGAGTGTATTACACCCAACCTGTATATCATCGTCAGTGGCAACACTGAAGGCAGAAGGGATAGGAACAGTCAATGGGAGGATATATGTGGGAACAGCCGAGAGCATTCCTCCTTTGGAGCTTATTGACACCACTGGTGCCGGGGATGCATTTATTGGAGCTGTGATCTATGCTATCTGTGCCAACTTTTCGCCAGAGACAATGCTTTCCTTTGCTGCTAATGTGGCAGCTGCCAAGTGTCGAGATTTAGGAGCACGCAGTGGTCTTCCATATCGTGCTGACCCACGCATAGCTTCCTTCATGCAGTAG 1227 0.4499 MSNSLLLLPPSSSSYSQPHSPLTLTFFNSRRKRRPCRYSRATMCSSHNSHPPNDVVVGCGAASVDFLATVASYPNPDDKIRSINLKVQGGGNAGNALTCVARLGLKPRIISKVADDSQGRSILDELHADGVDASFIVVSKEGTSPFTYIIVDNETKTRTCIHTPGYPPMIPQDLSESSLLTALNGANIVYFDGRLYETALVVAQEAVRKNIPILIDAERPREGLDDLLKFANYVVCSAKFPLAWTGASTIPQALVSILLRLPNIRFVIVTLGKDGCIMLERNLDVASSTEEVDIDSLVESLKMTTNESVLHPTCISSSVATLKAEGIGTVNGRIYVGTAESIPPLELIDTTGAGDAFIGAVIYAICANFSPETMLSFAANVAAAKCRDLGARSGLPYRADPRIASFMQ* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0923 408 PRINTS Ribokinase signature 58 79 IPR002139 GO:0016301
Amo12g0923 408 PRINTS Ribokinase signature 85 104 IPR002139 GO:0016301
Amo12g0923 408 PRINTS Ribokinase signature 267 278 IPR002139 GO:0016301
Amo12g0923 408 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 44 407 - -
Amo12g0923 408 CDD ribokinase_group_B 55 397 - -
Amo12g0923 408 Pfam pfkB family carbohydrate kinase 59 282 IPR011611 -
Amo12g0923 408 Pfam pfkB family carbohydrate kinase 319 396 IPR011611 -
Amo12g0923 408 Gene3D - 55 393 IPR029056 -
Amo12g0923 408 SUPERFAMILY Ribokinase-like 56 400 IPR029056 -
Amo12g0923 408 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 349 362 IPR002173 GO:0016773
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0923 Amo-Chr12 20820210 20825951 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0923 - - mtr:MTR_1g069320 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0923 12 20820210 20825951 Amo12g0923 12 20820210 20825951 ECH
Amo06g0333 06 4792168 4800565 Amo12g0923 12 20820210 20825951 PCT
Amo12g0923 12 20820210 20825951 Amo06g0333 06 4792168 4800565 PCT