Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0333 ATGGAGCTTTGCTTTGTGCTCAAAACATGTTCCCTTTCTAATTCTCACTTCTCCCTCTCTGTTTATGTGCAGTTAGGGTGTGGATCAGTGTCAATTGATTTGTTGGCCACTGTTGCTGCTTATCCCAAACCTGATGAAAAAATCAGAAGCACTTCTTTCAAGGTTGAAGGAGGTGGCAATGCAGCAAATGCTCTAACCTGTGCTGCTCGCTTGGGACTCAAGCCAAGGCTTATATCCAAGGTTGCAGATGACACTCATGGCAGGGCCATAATAGATGAATTACAGGCTGATGGTGTTGATACATCTTTTATAGTGGTATCCGAGGAAGGGACTTCACCATTTACTTATATCATTGTGGACAGTCAAACGAAGTCCCGTACTTGTATACATACCCCAGGATTTCCTAAACTGATGCCAGCTGAACTTCCTGAATCAACTTTGTTTTCTGCATTGAGCGGAGCAGGAATTGTTTTTTTGGATGGGAGGCTGAATGAAACTGCCTTGGTTGTTGCACACGAGGCAGTTAGGAAGAATATACCTATCTTAATGGATGCCGAAAGGCTCAGAGAAGGGCTTGATGATCTCATTCAATTGGCCGATTATCTTACATGTGCAACGCGGGCAACAACTATTCCAAAAGCACTCGTTTCTATGGTTTTAAGGTTACCCAAAGTCAAATTTGTGATTGTAACTCTGGGAAAAGATGGATGCATAATGCTTGAGAGAAGTGTTGATGAGGGTGCTTCAAGGGAAGAAGCGGATGTGGACATATTACTAGAATCTCTGGAGATGAAAAGGAATAGGAGCACATACATGCCAACCTGCATATCATCGTCAGTGACAAAATTGCAGGCAGAAGGCATAGGAACAGTTTGTGGGAGGTTATATGTTGGAACTGCCGAGAACATACCACCATCTGAGCTCATTGATACAACTGGTGCTGGAGATGCATTTGCTGGAGCTGTTCTCTATGCTCTCTGTGCCAACTTTTCAAGGGAGAACATGCTGTGCTTTGCTGCTACTGTGGCGGCAGCAAAGTGCAGAGCTCTAGGCGCACGAAGTGGCCTTCCACACCATACAGATCCGCGGCTAGAATCATTCATGCAACTAGGAAGAGAGAGAGAGAAAATGGCAACGATGTGGAATTCTTTATGCGTGGCCAATGGCACTCTCTTCAACTCTTCTTCTCCACTTCTTCCTCTTCGTTTCAATTCTAACTCCAACCTTCGATTTCGCCGCGCCACAATCACAAGCATGTGCGTTCCTGAAAACGACGTCGTTGTGATCGGTTACGGAATGACTACAGTTGACTTCTTGGCCACCGTTGACTCTTTTCCGAAGCCCGACGACAAGGTCCGCACCACCTCCTTCAAGGTTCAAGGAGGTGGCAATGCCGGCAACGCCTTAACCTGCGCCGCAAGACTCGGCTTGAAGCCTAAGCTCATCTCCAAGGTCGGCGACGATTCCCAAGGCCATGCTATTCTCAACGAGCTTCAGCGCGACGCCGTCGACACCTCCTTTGTCCTGGTATCAAAGGGTGGTAGTTCCGCGTTTTCGTATGTTCTAATCGACAACCAGACAAAAACTCGGACTAGTATTTACACCCCTGCACATCCTCCCATGATGCCAGATGATCAATCCCAATCAACCTTATTATCTGCATTTAATGAAGCAAGATTAGTGTATTTTGATGGACTGACTACCGATACCGCTCTATTCATTGCACAAGAGGCCGCTCGAAATAAGATACCGATTTTAGTTGAGGCCGAATCACCTAAGGAAGGATTGGATGAGCTTCTGAAACTTGCTGACTTTGCTGTATGCTCTGCAAGGTTTCCTAAGCACCCAAAAGATGGAGACCTGTGTGTTTGGACTTACTCTTCATGGTTTTTACAAAATGCTCCTCTTCTCAGCACCATAATATATATATTTCCTGATTTGACTCCTTCATTATGCATTTAG 1962 0.4562 MELCFVLKTCSLSNSHFSLSVYVQLGCGSVSIDLLATVAAYPKPDEKIRSTSFKVEGGGNAANALTCAARLGLKPRLISKVADDTHGRAIIDELQADGVDTSFIVVSEEGTSPFTYIIVDSQTKSRTCIHTPGFPKLMPAELPESTLFSALSGAGIVFLDGRLNETALVVAHEAVRKNIPILMDAERLREGLDDLIQLADYLTCATRATTIPKALVSMVLRLPKVKFVIVTLGKDGCIMLERSVDEGASREEADVDILLESLEMKRNRSTYMPTCISSSVTKLQAEGIGTVCGRLYVGTAENIPPSELIDTTGAGDAFAGAVLYALCANFSRENMLCFAATVAAAKCRALGARSGLPHHTDPRLESFMQLGREREKMATMWNSLCVANGTLFNSSSPLLPLRFNSNSNLRFRRATITSMCVPENDVVVIGYGMTTVDFLATVDSFPKPDDKVRTTSFKVQGGGNAGNALTCAARLGLKPKLISKVGDDSQGHAILNELQRDAVDTSFVLVSKGGSSAFSYVLIDNQTKTRTSIYTPAHPPMMPDDQSQSTLLSAFNEARLVYFDGLTTDTALFIAQEAARNKIPILVEAESPKEGLDELLKLADFAVCSARFPKHPKDGDLCVWTYSSWFLQNAPLLSTIIYIFPDLTPSLCI* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0333 653 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 409 614 - -
Amo06g0333 653 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 23 368 - -
Amo06g0333 653 CDD ribokinase_group_B 25 358 - -
Amo06g0333 653 SUPERFAMILY Ribokinase-like 428 609 IPR029056 -
Amo06g0333 653 Pfam pfkB family carbohydrate kinase 425 610 IPR011611 -
Amo06g0333 653 Pfam pfkB family carbohydrate kinase 28 242 IPR011611 -
Amo06g0333 653 Pfam pfkB family carbohydrate kinase 300 357 IPR011611 -
Amo06g0333 653 SUPERFAMILY Ribokinase-like 25 359 IPR029056 -
Amo06g0333 653 PRINTS Ribokinase signature 26 47 IPR002139 GO:0016301
Amo06g0333 653 PRINTS Ribokinase signature 228 239 IPR002139 GO:0016301
Amo06g0333 653 PRINTS Ribokinase signature 53 72 IPR002139 GO:0016301
Amo06g0333 653 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 310 323 IPR002173 GO:0016773
Amo06g0333 653 PANTHER PFKB FAMILY CARBOHYDRATE KINASE 409 614 - -
Amo06g0333 653 PANTHER PFKB FAMILY CARBOHYDRATE KINASE 23 368 - -
Amo06g0333 653 Gene3D - 25 354 IPR029056 -
Amo06g0333 653 Gene3D - 426 617 IPR029056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0333 Amo-Chr6 4792168 4800565 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0333 - - ccaj:109795876 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g0333 06 4792168 4800565 Amo12g0923 12 20820210 20825951 PCT
Amo12g0923 12 20820210 20825951 Amo06g0333 06 4792168 4800565 PCT