Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0916 ATGGCTTCAGATTCCAGTAATTCAAACCTTAGAATCATCGTTGAAAGCAATCCTTCAGAGTCACGCCTAGCTGAGTTGAATATTAAGTGCTGGCCCAAATGGGGTTGCGCTCCAGGGAAATACCAATTGAAATTTGATGCAGAGGAGACATGTTATTTGTTGAAAGGGAAGGTGAAGGCATATCCAAAAGGGTCATCAGATTTTGTGGAGTTTGGTGCTGGGGACCTTGTGATTTTACCAAAAGGACTTAGTTGCACTTGGCATGTTTCTGTTGCCGTAGACAAGTACTACAAATTTGAGTCATCAAATCATTCTTCTTCTTCTTCTTCTTGA 333 0.4114 MASDSSNSNLRIIVESNPSESRLAELNIKCWPKWGCAPGKYQLKFDAEETCYLLKGKVKAYPKGSSDFVEFGAGDLVILPKGLSCTWHVSVAVDKYYKFESSNHSSSSSS* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0916 110 Pfam EutQ-like cupin domain 24 97 IPR008579 -
Amo12g0916 110 Gene3D Jelly Rolls 2 99 IPR014710 -
Amo12g0916 110 PANTHER RMLC-LIKE CUPINS SUPERFAMILY PROTEIN 7 106 - -
Amo12g0916 110 SUPERFAMILY RmlC-like cupins 29 97 IPR011051 -
Amo12g0916 110 CDD cupin_TM1112-like 31 99 - -
Amo12g0916 110 PANTHER OS04G0445200 PROTEIN 7 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0916 Amo-Chr12 20554253 20555156 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0916 - - gmx:100793722 189.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1553 16 28794019 28795052 Amo12g0916 12 20554253 20555156 PCT
Amo06g0326 06 4709911 4710785 Amo12g0916 12 20554253 20555156 PCT
Amo12g0916 12 20554253 20555156 Amo16g1553 16 28794019 28795052 PCT
Amo12g0916 12 20554253 20555156 Amo06g0326 06 4709911 4710785 PCT