Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0482 ATGGCTTCTTCTTCTTCTTCTTCGATGTGCGCTTCTTACTCTTCAGTAATCTCGAGACCTTTTTATAAATCTCAACGGCAATTCGCGTTCTTCCGTACCGGGAAACTCGGTTCGGTTCCCGATTTGGGTGGGCGGTTCAGGTGTATGGCTGGTCAAACCGGATTCTTCACGAAGCTTGGGAGGCTAATAAAGGAGAAGGCGAAGAGCGATGTCGAGAAGATATTCTCCGGCGGGTTCACGAAGACGCGGAAAAACCTCGCCGTCATCGACGAGCTTCTTCTCTATTGGAATCTCTCCGACACCGATCGAGTACTCGACGAGCTCGAAGAGGCTCTTTTGGTGTCTGATTTTGGACCAAAAATCACTATTAAGATAGTGGAGAATTTGCGTGAGGATATATTGTCAGGGAAGCTCAAATCAGGCACTGAGATAAAGGGGAGTAAAACTGAACTTCAACTTGGATTCAGGAAGCCAGCTGTAATAATGATAGTTGGTGTTAATGGTGGTGGAAAGACAACATCTCTGGGAAAGCTGGCGTATAGACTGAAGAAAGAAGGGGCAAAGATACTGATGGCTGCTGGTGATACATTTAGAGCAGCTGCTGGTGATCAGCTAGAGATATGGGCTGAAAGGACTGATTGTGAGATTGTTAGGGCTGAATCAGAGAAAGCCAAAGCATCATCAGTGCTTACACAAGCTGTGAAAAAGGGAAAAGAACTAGGTTTCGATATTGTTTTATGCGATACATCTGGACGTTTACACACTAATTACAGCCTAATGGAAGAATTGATTTCTTGTAAAAAGGCAGTGAGCAAAGTCGTTGCTGGTGCCCCTAATGAGATCCTACTGGTTCTGGATGGAACTACAGGTTTGAATATGCTGCCACAGGCAAGAGAGTTCAATGAGGTTGTAGGTGTTACGGGTTTAATTTTGACCAAGCTGGATGGTTCTGCAAGAGGCGGCTGTGTGGTCAGTGTTGTTGATGAGCTTGGAATCCCTGTTAAATTTGTGGGTGTTGGTGAACGTGTAGAAGACCTTCAACCCTTTGATGCAGAGGCCTTTGTCAATGCCATCTTTTCGTAA 1083 0.4534 MASSSSSSMCASYSSVISRPFYKSQRQFAFFRTGKLGSVPDLGGRFRCMAGQTGFFTKLGRLIKEKAKSDVEKIFSGGFTKTRKNLAVIDELLLYWNLSDTDRVLDELEEALLVSDFGPKITIKIVENLREDILSGKLKSGTEIKGSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAYRLKKEGAKILMAAGDTFRAAAGDQLEIWAERTDCEIVRAESEKAKASSVLTQAVKKGKELGFDIVLCDTSGRLHTNYSLMEELISCKKAVSKVVAGAPNEILLVLDGTTGLNMLPQAREFNEVVGVTGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGERVEDLQPFDAEAFVNAIFS* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0482 360 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 333 346 IPR000897 GO:0005525|GO:0006614
Amo12g0482 360 Pfam SRP54-type protein, GTPase domain 158 359 IPR000897 GO:0005525|GO:0006614
Amo12g0482 360 Gene3D - 151 360 IPR027417 -
Amo12g0482 360 PANTHER SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA 5 360 - -
Amo12g0482 360 CDD FtsY 159 358 - -
Amo12g0482 360 PANTHER BNAA04G26420D PROTEIN 5 360 - -
Amo12g0482 360 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 359 IPR027417 -
Amo12g0482 360 SMART SRP54_3 158 360 IPR000897 GO:0005525|GO:0006614
Amo12g0482 360 TIGRFAM ftsY: signal recognition particle-docking protein FtsY 101 359 IPR004390 GO:0006614
Amo12g0482 360 SMART AAA_5 157 349 IPR003593 -
Amo12g0482 360 Pfam SRP54-type protein, helical bundle domain 101 145 IPR013822 GO:0005525|GO:0006614
Amo12g0482 360 Gene3D - 61 150 IPR042101 -
Amo12g0482 360 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 75 145 IPR036225 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0482 Amo-Chr12 7705957 7709752 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0482 K03110 - gmx:100791073 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0482 12 7705957 7709752 Amo12g0482 12 7705957 7709752 ECH
Amo12g0482 12 7705957 7709752 Amo02g0609 02 7912455 7916127 hybridization