LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo02g0609	ATGGCTTCTTCTCCTTCTTCGATGTGCGCTTCTTACTCTTCAGTAATCTCGAGACCTTTTTATAACTCTCAACCGCAATTCGCGTTCTTCCGTACCGGGAAACTTGGTTCGGTTCCCGATTCGGGTGGGAGGTTCAGGTGTATGGCTGGTCAAACCGGATTCTTCACGAAGCTTGGGAGGCTAATAAAGGAGAAGGCGAAGAGCGACGTTGAGAAGATATTCTCCGGCGGGTTCACGAAGACGCGGAAAAACCTCGTCGTCATCGACGAGCTTCTTCTCTATTGGAATCTCTCCGACACCGATCGAGTACTCGACGAGCTCGAAGAGGCTCTTTTGGTGTCTGATTTTGGACCAAAAATCACTATTAAGATAGTGGAGATTTTGCGTGAGGATATATTGTCAGGGAAGCTCAAATCAGGCACCGAGATAAAGGAAGCACTGAAACAGAATGTCTTGGATTTGTTGACCACTAAGGGGAGTAAAACTGAACTTCAACTTGGATTCAGGAAGCCAGCTGTAATAATGATAGTTGGTGTTAATGGTGGTGGAAAGACAACATCTCTGGGAAAGCTGGCGTATAGACTGAAGAAAGAAGGGGCAAAGATACTGATGGCTGCTGGTGATACATTTAGAGCAGCTGCTAGTGATCAGCTAGAGATATGGGCTGAAAGGACTGATTGTGAGATTGTTAGGGCTGAATCAGAGAAAGCCAAAGCATCATCAGTGCTTACACAAGCTGTGAAAAAGGGAAAAGAACTAGGTTTCGATATTGTTTTATGCGATACATCTGGACGTTTACACACTAATTACAGCCTAATGGAAGAATTGATTTCTTGTAGAAAGGCAGTGAGCAAAGTCGTTGCTGGTGCCCCTAATGAGATCCTACTGGTTCTGGATGGAACTACAGGTTTGAATATGCTGCCACAGGCAAGAGAGTTCAATGAGGTTGTAGGTGTTACGGGTTTAATTTTGACCAAGCTGGATGGTTCTGCAAGAGGCGGCTGTGTGGTCAGTGTTGTTGATGAGCTTGGAATCCCTGTTAAATTTGTGGGTGTTGGTGAACGTGTAGAAGACCTTCAACCCTTTGATGCAGAGGCCTTTGTCAATGCCATCTTTTCGTAA	1122	0.4528	MASSPSSMCASYSSVISRPFYNSQPQFAFFRTGKLGSVPDSGGRFRCMAGQTGFFTKLGRLIKEKAKSDVEKIFSGGFTKTRKNLVVIDELLLYWNLSDTDRVLDELEEALLVSDFGPKITIKIVEILREDILSGKLKSGTEIKEALKQNVLDLLTTKGSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAYRLKKEGAKILMAAGDTFRAAASDQLEIWAERTDCEIVRAESEKAKASSVLTQAVKKGKELGFDIVLCDTSGRLHTNYSLMEELISCRKAVSKVVAGAPNEILLVLDGTTGLNMLPQAREFNEVVGVTGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGERVEDLQPFDAEAFVNAIFS*	374

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo02g0609	373	SMART	SRP54_N_2	74	155	IPR013822	GO:0005525\|GO:0006614
	Amo02g0609	373	SMART	AAA_5	170	362	IPR003593	-
	Amo02g0609	373	Gene3D	-	60	162	IPR042101	-
	Amo02g0609	373	PANTHER	SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA	39	373	-	-
	Amo02g0609	373	CDD	FtsY	172	371	-	-
	Amo02g0609	373	SMART	SRP54_3	171	373	IPR000897	GO:0005525\|GO:0006614
	Amo02g0609	373	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	168	372	IPR027417	-
	Amo02g0609	373	Gene3D	-	163	373	IPR027417	-
	Amo02g0609	373	ProSitePatterns	SRP54-type proteins GTP-binding domain signature.	346	359	IPR000897	GO:0005525\|GO:0006614
	Amo02g0609	373	PANTHER	BNAA04G26420D PROTEIN	39	373	-	-
	Amo02g0609	373	Pfam	SRP54-type protein, GTPase domain	171	372	IPR000897	GO:0005525\|GO:0006614
	Amo02g0609	373	SUPERFAMILY	Domain of the SRP/SRP receptor G-proteins	74	148	IPR036225	-
	Amo02g0609	373	TIGRFAM	ftsY: signal recognition particle-docking protein FtsY	100	372	IPR004390	GO:0006614
	Amo02g0609	373	Pfam	SRP54-type protein, helical bundle domain	100	149	IPR013822	GO:0005525\|GO:0006614

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo02g0609	Amo-Chr2	7912455	7916127	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo02g0609	K03110		-	gmx:100791073	600.512

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo12g0482	12	7705957	7709752	Amo02g0609	02	7912455	7916127	hybridization