Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0431 ATGACCGCCGTCGAATCCCAACCCTCCCTCACCGCCATGGCCCCCACCATCCTCTCCTCCGCAGCTCCCAACCAGATTCGCTTCTTGCTCACCTCCTTGAACGAAGTCAACTTTGACTCCGTTCTCCATCAACTCTCTCAGTTTGCTGAGTTTGGAACCGTTGGATGCATTTTGCTGCTTCAGACATGCTTTGATCACTTTAATTATGTCAGGAGAGATTTGAAAGATGTGAAGTATGAGCCAATTCTTGGGGCAGTCATAAAGCACCTCCTGGACAAACCAAACTTTAGCACGGTGTTTTCGGAGTCAATGAAGAATATAGACATCAACGAAAACTTCCTAGCAAATTTTTGTAATGGACTACAGTTGTCTTTACTGGAAAAAATTACCATCAGTCTTGCATTATCTGATTCTGAAAATCCTGAAACCAGGTTATCTGGCAAGAAATTTTGCATGGCTCAGATTGAGGAATTGCATGCCAATCCTGGTTCTTTGAGTTGCCATGAACAAATTCACAATATTATCATGTTCCTCAAGCAATCAGAGGGTCTCTCCAAGCATGTAGATTCCTTTATGCAGATATTAGCATTGGTGCAGTTCAAGGACACCCCACCTTTTGTTCTGAATCCGCTGCTACCCGATGAGATGCACGAGGCTGATTTTTTGAGGAATATGGAGTTGTTCCATGATTCTGTAGAAAATGATTTTGATGCTATTTTGGCAGACATACAGAAGGAAATGAACATGGGAGATATTGTGAAGGAACTAGGCTATGGGTGCACAGTTGACGTCTCTCAGTGCAAGGAGATCTTGTCACTTTTCTTACCTTTAACTGACAGTGCCCTCTCTAAATTACTTGGTGCTATTGCTCGTACCCATGCAGGGCTGGAGGACAACAAGTGTACATTCTTAACTTTTGGTGCAGCCCTTGGATACAATAACTTGTCTGAGTTGCCACTGCCGAACTCTTGGAACATTGATGTGTTGATAGATACAATCAAGCAGCTTGCACCTCAAACCAACTGGGTACGGGTTATTGAAAATCTTGATCATGAAGGATTTTTCCTTCCTAGTGAAGAAGCATTCTGTTTTCTGATGTCTGTGTATAGACATGCCTGTAAGGAGCCGTTTCCTCTCCATGCCATCTGTGGATCTGTGTGGAAGAATACTGAGGGTCAGCTATCTTTCCTAAAATATGCTGCATCAGCACCACCGGAAGTGTTTACCTTCGCGCACTCTACAAGGCTGCTGGCATATAATGATGCGATTAATGGCCTCAAGCTTCAAAATGGACATGCTAATCATGCATGGCTGTGTCTTGACCTTCTGGATGTTCTCTGCCAGCTAGCTGAGAAGGGTCATGCCAGTTATGTTCGGTTGATACTTGATTATCCCCTGAAACACTGTCCTGAAGTCTTGCTTCTAGGGATGGCACACATTAATACTGCTTACAACCTCTTCCAACATGAAGTATCTCTAGTTGTTTTCCCCATGATACTAAAGAGTGCTGGAGGTAGTGGAATGATTCAACATCTATGGCATGCTAATCCTAATCTGGTCTTACGAGGGGTTATTGATTCCCAAAACAATGACCTGGACAGTGTTACAAGAATTGTTGACATCTGCCAGGAGCTAAAGATTCTATCATCAGTACTGGAAGTCATTCCCTCCTATTATAGTATAAGATTAGCAGCTGTTGCTTCAAGAAAAGAATTCCTTGACCTTGAGAAGTGGCTGAGTAACAACTTATCTATGTACATGGATGTCTTCTTTGAGGAGTGCCTCAAATTCGTAAAAGATATCCATTTTGGTAGATCACAGAGCTTATCTGGTAAATCTTTTCATCAGTCTGGTGCTGTTCTGAATCTTTATGCTGAGACTACTCCTACCTTCTTGAAGGTTCTGAAATCTCATACTGACTTTGTTAACTCTAGTCAACTTTCTGAGGAGCTGGAGAGGTTGCAGGTATCTATGATAGATTCAAACCCAAGACTGCAAAATGGTGCGCCTGCAGATTCATCTACCTCTGATGGATATTCGGATGACATTGAACATGAAGCAAACTCGTACTTCCATCAGATGTTTTCTGATCTGTTAACCATCAATGCAATGGTGCAAATGCTTGCCCGGTTCAAGGAATCTTCTGTGAAGAGGGAGAAATCAATTTTTGATTGCATGATTGGAAACTTGTTTGAGGAGTATAAATTTTTTCCGAAATATCCTGAAAGGCAACTCAAAATTGCTGCAGTTCTCTTTGGTTCCATCATAAAGCATCACCTTGTGACTCATCTGTCTCTGGGGATTGCTCTTCGATATGTTCTTGATTCGTTACGCAAGCCTGCAGATTCAAAGATGTTTACGTTTGGAAGTCTGGCTTTGGAGCAGTTTGTGGACCGCCTTATTGAGTGGCCTCAGTATTGCAATCACATTCTGCAAATTTCCCATTTGCGCAGCACACATTCAGAAATCGTCACTTTCATTGAACAGGCTCTTGCCAGGATTTCTGCTGGTCATGCAGATGTGGATGGGGTGAACCATGCTTCACTTATTAGTAACCATAATTCTGCACATACTATGTTAGGGCATGTGGAGCAGCTCAATGGCTCTGGTGTCATCCAGCCTGGGCAGCAACATATATCACTGCAGCTTCAACAGAGGCGTGATATTCCCTTGGATGATCGTCACAAAGCCTCTGTTGGTTCATCCACTGATGTAAAACCGATCTTATCATCTGTAGGGCAATCTTCAGCAGTTACTCCTGCTGATACTTCTAGTAGTAATAAGCTACATAGCACTGGCAGCGCATCGTCGATGTTATCTTCTCCTGGTTTTGTTCGTCCTTCGCGAGGAGCTACTTCAACCAGGTTTGGATCAGCCTTGAACATTGAAACTTTGGTTGCAGCTGCTGAGAAAAGAGAAACTCCCATCGAGGCTCCAGGGTCAGAGGTTCAGGACAAGATATCATTTATAATTAATAATATATCTACTGCAAATATTGAAGCTAAAGCAAAAGAATTCACCGAAATTTTGAAAGAGCAGTACTATCCATGGTTTGCACAGTATATGGTTATGAAAAGAGCGAGCATTGAGCCAAATTTCCATGACTTGTACCTGAAATTCCTAGATAAAGTCAATTCAAAGGCTTTGAACAAAGAGATTGTGCAGGCAACCTATGAAAATTGCAAGGTTCTTTTAGGATCTGAGCTCATAAAGTCTAGTTCAGAAGAACGCTCTTTGCTTAAAAATCTGGGAAGCTGGCTTGGAAAGTTAACAATTGGGCGGAATCAGGTTTTGAGGGCTCGTGAAATAGACCCAAAATCTTTGATTATAGAGGCATATGAGAAGGGGCTGATGATAGCTGTTATCCCATTTACTTCAAAGGTCCTTGAACCATGCCAAAGCAGTCTTGCATATCAACCCCCTAATCCTTGGACGATGGGCATTCTGGGATTGCTTGCTGAGATTTATTCAATGCCAAACTTGAAAATGAACCTCAAATTTGACATAGAGGTGTTGTTCAAAAATCTTAGTGTGGATATGAAGGATGTTACGCCAACTTCTCTCCTGAAGGATCGGAAAAGAGAAATTGAAGGAAATCCTGATTTCTCCAATAAAGATGTTGGGGCGTCTCAAGCACAAATGATGTCTGATATAAAATCTAGCCTTATACAGCCAGTAAATCAAGTGGAGTTACCACTTGAAGTTACCAATCCATCTAATACTGGGGCACATCCTCATTTACTCTCTCAGTACGCTAGTCCACTTCATATTTCCACTGGAGCCTTGATGGAGGATGAAAAGGTAACACCTCTAGGCTTGTCTGATCAACTTCCATCTGCTCAAGGACTATTACAAGCAACTCCTACGCCTGTACCTTTTTCCCTTAGCCAGCTCCCATCACAGATACCTAATATTGCAACTCATCTTATTATCAATCAGAAGCTTAGTGGTTTTGGGTTGCAAATGCATTTTCAGAGGGCTGTACCTATTGCAATGGAGAGAGCTATCAAAGAGATAGTATCTAGTATTGTGCAGCGTAGTGTTTCCATAGCTACACAAACAACAAAGGAGCTTGTTTTAAAGGATTATGCCATGGAATCAGACGAGACACGCATAGTAAATGCTGCACACCTGATGGTTGCCAGTCTGGCTGGGAGCTTAGCTCATGTTACATGCAAAGAACCTTTAAGGGCATCAATATCAAGTCAACTAAGAATTTCACTTCAGAATTTAAATATTGCAAATGAAATTTTGGAGCAAGCTGTGCAACTTGTCACCAATGATAATCTTGATCTTGGTTGTGCAGTCATTGAGCAGGCTGCTACTGATAAGGCAATAACCACCATTGATACAGAAATTAATCAACAACTTTCTATGAGAAGGAAGCATCGAGAAGGTATGGGTTCCACATTTTTTGATACAAACTTGTACACACAAAGTTCTATGGGTGTTGTGCCAGAGCCTCTTCGACCCAAGCCTGGTCAGTTGTCCCTCTCGCAGCAGCGCGTCTATGAGGACTTCGTTCGGCTTCCCTGGCAAAATCAGTCAAGTCAGAGCTCACATTCTATGTCATCTGGTCTTTCGGTTCAATCTGGAAATGCTGGTCTCGCTGGCACTAATGGTTCTGTATCAGGACAAATTAACCCTGGTTACTCTGTAAGCTCCAGCTATGAAGGAGGGGTGTCGCGACCAGTAGAAGATATGTCGGAATCTAATTTGGCTCAACACTTCAGTGCTTCCTCAATTCACATTAGAGCTGCTGACAGTGTTTCCCAGCACAGTTTGGAGAAAGAATCAGTTGCCTCATTTCCTTCAACTGCTTCCACACCTGAGTTGCACACTGTTGATACTTCTGATTCTATGAAAGAATCTGGAGCTTCACAGCCACTAGCAAGTGTCGTAGAGCGCATTGGAAGTAGTTTCTTGGAGCCCACTATTTCTACAAGGGAAGCCTTGGATAAATACCAAATGGTTGCACAAAAGTTGGAGGCTTTGGTTAATAATGATGCCAAGGAAGCAGAAATACAGGGGGTCATATCCGAGGTTCCTGAGATCATACTCAGATGTGTTAGTCGAGATGAGGCAGCTTTAGCTGTAGCTCAGAAGGTATTCAAGGGCCTTTATGACAATGTATCCAACAACACTCATGTTGGTGCTCATCTTGCAATCCTGACTGCCATTCGCGATGTTTGCAAGCTTGCCGTTAAGGAGCTTACCAGCTGGGTAATTTACTCAGAAGAAGAAAGGAAATTCAACAAAGATATTACTGTAGGCCTGATCCGCAGTGAACTGCTAAATCTTACCGAGTACAATGTTCATATGGCAAAGCTCATTGATGGGGGGAGAAACAAGGCTGCTACGGAGTTTTCTATTTCTCTTCTTCAAATGCTGGTTGTTGAGGAACTGAAAGTTATTTCAGAACTTCACAATCTTGTTGATGCTTTGGCAAAGCTTGCTTCAAAGCCTGGATCCCCTGAATCGTTGCAACAGCTGATTGAGATGATCAAGAACCCTTCTGTTAGTGTTCCTGCAAAGGAGGATAAGGCAAGACAATCAAGGGACAATAAGGGTCCTGGGATGCTGGCACCAAACCGGGAAGAAGTAAACATTGTAGAGTCTGTTGAACCAGATCCTGCTGGATTCCGTGAGCAGGTTTCCATGTTGTTTACAGAATGGTATCGGATATGTGAACTCCCTCCTCCGAATGATACAGCTTCTACTCACTTCATCTTACAATTACATCAAAATGGTCTCCTTAAGGGGGATGATGTAACAGATCGCTTCTTCCGGCTATTGATGGAACTAGTTGTTACACACTGCTTAAACAGTGAGGTGATTAATTCTGGGGCATTGCAATCTTCTCAACAGCTGCCAGCAATGTCATTTATTGCGATTGATATTTATGCCAAGCTTGTCTTCTCAATATTGAAGGGATCAAACAAGTCCTTTCTTCTTTCTAAGATTCTTGCGGTGACTATTCGGTTGATTCTAAAAGATGCAGAAGAGAAGAAGGCCTCTTTTAATCCAAGACCGTATTTCAGATTGTTCATTAATTTGCTTCTAGATCTTGGTTCACTTGAACCTGTTACTGATGGTGCAAATCTCCAGATTTTGATTGCTTTTGCCAATACTTTTCATGCTTTGCAGCCCCTCAAGGTTCCTGCTTTCAGTTTTGCTTGGCTTGAGTTGATAAGTCACAGGAGCTTTATGCCAAAAATGCTGACTGGTAATGGTCAAAAAGGTTGGCCTTATATCCAAAGGTTGCTTGTTGATCTCTTCCAATTTATGGAGCCTTTTCTGAGACATGCTGAACTCGGAGATCCGGTCCGTTTTCTCTATAAAGGCACTCTTAGGGTGCTACTGGTGCTACTTCATGACTTCCCTGAGTTCCTATGTGACTTTCACTTTACCTTCTGTGATGTTATTCCGCCAAGTTGCATACAGATGCGGAATATTGTTCTGAGTGCTTTTCCGCGGAGTATGAGGTTGCCAGATCCATCCACCCCCAATTTGAAGATTGATTTGCTTCAAGAAATTACTCAATCCCCAAGGATTCTTTCGGAGGTCGATGCTGCTATTAAAGCGAAGCAGATTAAGGCTGATGTGGATGAATACCTTAAGACAAGACAGCAAAATTCTCCATTTTTGTCTGAGCTGAAGGACAAGATGCTCCTTTCACCTAATGAAGCTGCTTCTGCCGGGACACGTTACAATGTGCCATTGATCAACTCACTTGTGTTGCATGTTGGAATGCAGGCAATCCAACAACTTCAGGGACGATCTCCCCATGCTCAATCTGCATCACCTGGTTTCCCCTTGGCTGTATTTTCTGTTGGTGCTGCATTGGATATTTTCCAGACACTAATTGTGGACTTGGACACTGAAGGGCGCTATCTTTTCTTAAATGCCGTTGCCAACCAACTACGCTACCCTAACACACACACCCACTACTTTTCCTTCATCCTTCTGTACTTGTTTGCGGAATCAAACCAGGAAATCATCCAAGAACAAATTACTAGAGTATTGTTAGAACGGCTAATCGTTAATCGTCCTCATCCTTGGGGACTGCTCATCACTTTCATTGAGCTGATCAAGAACCCGAGGTATAATTTCTGGAACCGGTCTTTCATAAGATGCGCACCAGAGATTGAGAAACTTTTTGAGTCCGTCTCTAGATCCTGCGGCGGTCCAAAACCAGTGGATGAGAGTATGGTCTCCGGTTGGGTTTAA 7230 0.4275 MTAVESQPSLTAMAPTILSSAAPNQIRFLLTSLNEVNFDSVLHQLSQFAEFGTVGCILLLQTCFDHFNYVRRDLKDVKYEPILGAVIKHLLDKPNFSTVFSESMKNIDINENFLANFCNGLQLSLLEKITISLALSDSENPETRLSGKKFCMAQIEELHANPGSLSCHEQIHNIIMFLKQSEGLSKHVDSFMQILALVQFKDTPPFVLNPLLPDEMHEADFLRNMELFHDSVENDFDAILADIQKEMNMGDIVKELGYGCTVDVSQCKEILSLFLPLTDSALSKLLGAIARTHAGLEDNKCTFLTFGAALGYNNLSELPLPNSWNIDVLIDTIKQLAPQTNWVRVIENLDHEGFFLPSEEAFCFLMSVYRHACKEPFPLHAICGSVWKNTEGQLSFLKYAASAPPEVFTFAHSTRLLAYNDAINGLKLQNGHANHAWLCLDLLDVLCQLAEKGHASYVRLILDYPLKHCPEVLLLGMAHINTAYNLFQHEVSLVVFPMILKSAGGSGMIQHLWHANPNLVLRGVIDSQNNDLDSVTRIVDICQELKILSSVLEVIPSYYSIRLAAVASRKEFLDLEKWLSNNLSMYMDVFFEECLKFVKDIHFGRSQSLSGKSFHQSGAVLNLYAETTPTFLKVLKSHTDFVNSSQLSEELERLQVSMIDSNPRLQNGAPADSSTSDGYSDDIEHEANSYFHQMFSDLLTINAMVQMLARFKESSVKREKSIFDCMIGNLFEEYKFFPKYPERQLKIAAVLFGSIIKHHLVTHLSLGIALRYVLDSLRKPADSKMFTFGSLALEQFVDRLIEWPQYCNHILQISHLRSTHSEIVTFIEQALARISAGHADVDGVNHASLISNHNSAHTMLGHVEQLNGSGVIQPGQQHISLQLQQRRDIPLDDRHKASVGSSTDVKPILSSVGQSSAVTPADTSSSNKLHSTGSASSMLSSPGFVRPSRGATSTRFGSALNIETLVAAAEKRETPIEAPGSEVQDKISFIINNISTANIEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMGILGLLAEIYSMPNLKMNLKFDIEVLFKNLSVDMKDVTPTSLLKDRKREIEGNPDFSNKDVGASQAQMMSDIKSSLIQPVNQVELPLEVTNPSNTGAHPHLLSQYASPLHISTGALMEDEKVTPLGLSDQLPSAQGLLQATPTPVPFSLSQLPSQIPNIATHLIINQKLSGFGLQMHFQRAVPIAMERAIKEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRIVNAAHLMVASLAGSLAHVTCKEPLRASISSQLRISLQNLNIANEILEQAVQLVTNDNLDLGCAVIEQAATDKAITTIDTEINQQLSMRRKHREGMGSTFFDTNLYTQSSMGVVPEPLRPKPGQLSLSQQRVYEDFVRLPWQNQSSQSSHSMSSGLSVQSGNAGLAGTNGSVSGQINPGYSVSSSYEGGVSRPVEDMSESNLAQHFSASSIHIRAADSVSQHSLEKESVASFPSTASTPELHTVDTSDSMKESGASQPLASVVERIGSSFLEPTISTREALDKYQMVAQKLEALVNNDAKEAEIQGVISEVPEIILRCVSRDEAALAVAQKVFKGLYDNVSNNTHVGAHLAILTAIRDVCKLAVKELTSWVIYSEEERKFNKDITVGLIRSELLNLTEYNVHMAKLIDGGRNKAATEFSISLLQMLVVEELKVISELHNLVDALAKLASKPGSPESLQQLIEMIKNPSVSVPAKEDKARQSRDNKGPGMLAPNREEVNIVESVEPDPAGFREQVSMLFTEWYRICELPPPNDTASTHFILQLHQNGLLKGDDVTDRFFRLLMELVVTHCLNSEVINSGALQSSQQLPAMSFIAIDIYAKLVFSILKGSNKSFLLSKILAVTIRLILKDAEEKKASFNPRPYFRLFINLLLDLGSLEPVTDGANLQILIAFANTFHALQPLKVPAFSFAWLELISHRSFMPKMLTGNGQKGWPYIQRLLVDLFQFMEPFLRHAELGDPVRFLYKGTLRVLLVLLHDFPEFLCDFHFTFCDVIPPSCIQMRNIVLSAFPRSMRLPDPSTPNLKIDLLQEITQSPRILSEVDAAIKAKQIKADVDEYLKTRQQNSPFLSELKDKMLLSPNEAASAGTRYNVPLINSLVLHVGMQAIQQLQGRSPHAQSASPGFPLAVFSVGAALDIFQTLIVDLDTEGRYLFLNAVANQLRYPNTHTHYFSFILLYLFAESNQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVSRSCGGPKPVDESMVSGWV* 2410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0431 2409 MobiDBLite consensus disorder prediction 1595 1625 - -
Amo12g0431 2409 Pfam CCR4-NOT transcription complex subunit 1 CAF1-binding domain 976 1196 IPR032191 -
Amo12g0431 2409 Gene3D - 948 1198 - -
Amo12g0431 2409 Gene3D - 2160 2389 - -
Amo12g0431 2409 Pfam CCR4-Not complex component, Not1 2021 2390 IPR007196 -
Amo12g0431 2409 Coils Coil 1408 1428 - -
Amo12g0431 2409 Pfam CCR4-NOT transcription complex subunit 1 HEAT repeat 495 636 IPR032194 -
Amo12g0431 2409 Pfam CCR4-NOT transcription complex subunit 1 TTP binding domain 663 833 IPR032193 -
Amo12g0431 2409 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX 23 2408 IPR040398 GO:0017148|GO:0030015
Amo12g0431 2409 MobiDBLite consensus disorder prediction 894 952 - -
Amo12g0431 2409 Gene3D - 1870 2159 - -
Amo12g0431 2409 MobiDBLite consensus disorder prediction 903 952 - -
Amo12g0431 2409 Pfam CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 1322 1464 IPR024557 -
Amo12g0431 2409 PANTHER BNACNNG58980D PROTEIN 23 2408 - -
Amo12g0431 2409 Gene3D - 669 836 IPR038535 -
Amo12g0431 2409 MobiDBLite consensus disorder prediction 1842 1862 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0431 Amo-Chr12 7082781 7100874 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0431 K12604 - gmx:100783935 4091.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0431 12 7082781 7100874 Amo12g0431 12 7082781 7100874 ECH
Amo12g0431 12 7082781 7100874 Amo02g0511 02 6342287 6360266 hybridization