Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0427 ATGTTGCATAGACGCACATTCTCGTTCTTCTTCTTCATTACGACTACTCTTGTCCTCATGACATTCACATCATCATATTCACATGCGCATTCCATTGCCATCTCATCAAGATCAATGGCAGACATGGAAAGGTTCAGCAATGCTGGGAGAGGCAGCAACATCACCGGAATATCAGAGTTCAAGAGATATCTATGGCGTTTTGGGTACCTCAACCATAATATTAATACCACATGTACTTGTTTCAGCGACGAGTTTGACGCCATGTTAGAATCTGCTCTCGTTAGATACCAACGCAAGCTTGGACTCCAAGTCACTGGCAAGCTCGATTCCATCACCATTTCTCAGATGATCACACCGAGATGCGGAGTTCCAGACAGTAATGATCACACTCACACTCACATGCACTCCACAAAGAACTTTGTGTATTTTCCGGGGAAGCCACGGTGGTCGGGTCCAATGCCGACGACACTCACCTACGCTTTCTCCCCGGAATACACCATCCACACCTTGACCCTTCGCCAGATCCGGAGAGCSTTCCGACGCGCCTTCACGCGCTGGTCTAACGTCATTCCTCTCACATTTGTGGAATCAGACGACTACRGTTTTGCTGAGATCAAGATAGGGTTTTACAGCGGCGACCACGGCGATGGCGAGGCTTTCGACGGGGTTCTTGGAGTGCTGGCGCATTCATTCTCGCCGGAGAGCGGGCGGCTACACCTGGATGCGGCTGAGACGTGGGCGGTGGACTTCGGGGAGAGTTGGTCGGAGGTAGCGGTGGATTTGGAGTCCGTGGCAACGCACGAGATTGGACACGTGCTTGGTCTGTCACACAGTTCGGTTAGAGAGGCAGTTATGTATCCCAGCTTGAGGCCGAGAGAGAAGAGATATCGTCTCCACATTGATGACGTCATGGGAGTCCAATCTCTTTATGGCTCCAACCCTCATTTCAGATCATCTGATGTCTCGTCGCTTCAATCTGCTATCTCCGCAAATCAAGCTCCTCCTCGCTTTCCACCATTCAATATTCTTCTCTCTTGTGCATACCTTTTCTCTTTCTTTATAATTTTTTGCAGGTAA 1077 0.4949 MLHRRTFSFFFFITTTLVLMTFTSSYSHAHSIAISSRSMADMERFSNAGRGSNITGISEFKRYLWRFGYLNHNINTTCTCFSDEFDAMLESALVRYQRKLGLQVTGKLDSITISQMITPRCGVPDSNDHTHTHMHSTKNFVYFPGKPRWSGPMPTTLTYAFSPEYTIHTLTLRQIRRAFRRAFTRWSNVIPLTFVESDDYXFAEIKIGFYSGDHGDGEAFDGVLGVLAHSFSPESGRLHLDAAETWAVDFGESWSEVAVDLESVATHEIGHVLGLSHSSVREAVMYPSLRPREKRYRLHIDDVMGVQSLYGSNPHFRSSDVSSLQSAISANQAPPRFPPFNILLSCAYLFSFFIIFCR* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0427 358 PRINTS Matrixin signature 203 231 IPR021190 GO:0004222|GO:0006508|GO:0008270
Amo12g0427 358 PRINTS Matrixin signature 116 129 IPR021190 GO:0004222|GO:0006508|GO:0008270
Amo12g0427 358 PRINTS Matrixin signature 179 194 IPR021190 GO:0004222|GO:0006508|GO:0008270
Amo12g0427 358 PRINTS Matrixin signature 264 289 IPR021190 GO:0004222|GO:0006508|GO:0008270
Amo12g0427 358 PRINTS Matrixin signature 298 311 IPR021190 GO:0004222|GO:0006508|GO:0008270
Amo12g0427 358 SUPERFAMILY PGBD-like 49 125 IPR036365 -
Amo12g0427 358 ProSitePatterns Matrixins cysteine switch. 119 126 IPR021158 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Amo12g0427 358 Pfam Putative peptidoglycan binding domain 57 116 IPR002477 -
Amo12g0427 358 Pfam Matrixin 154 311 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Amo12g0427 358 PANTHER METALLOENDOPROTEINASE 4-MMP 25 336 - -
Amo12g0427 358 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 141 313 - -
Amo12g0427 358 PANTHER MATRIX METALLOPROTEINASE 25 336 - -
Amo12g0427 358 SMART col_5 145 312 IPR006026 GO:0006508|GO:0008237|GO:0008270
Amo12g0427 358 CDD ZnMc_MMP 148 311 IPR033739 GO:0008237|GO:0008270
Amo12g0427 358 Gene3D Collagenase (Catalytic Domain) 48 316 IPR024079 GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0427 Amo-Chr12 7016825 7017901 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0427 - K07999 gmx:100781237 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0427 12 7016825 7017901 Amo02g0494 02 6129751 6130833 hybridization