Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0494 ATGTTGCATAGACGCACATTCTCGTTCTTGTTCTTCATTACGACTACTCTTGTCCTCATGACATTCACATCATCACATTCACTTGCGCATTCTATTGCCATCTCATCAAGATCAATGGCAGACATGGAAAGGTTCAGCAATGCTGGGAGAGGCAGCAACATCACCGGAATATCAGAGTTCAAGAGATATCTATGGCGTTTCGGGTACCTCGACCATAATGTTAATACCACATGTAATTGTTTCAGCGAAGAGTTTGACGCCATGTTAGAATCTGCTCTCGTTAGATACCAACGCAAGCTTGGACTCCAAGTCACTGGCAAGCTCGATTCCATCACCATTTCTGAGATGATCACACCGAGATGCGGAGTTCCAGACAGTAATGATCACACTCACACACACACTCACATGCACTCCGCAAAGAACTTCGTGTATTTTCCGGGGAAGCCACGGTGGTCGGGTCCAATGCCGACGACACTCACCTACGCTTTCTCCCCGGAATACACCATCCACACCTTGACCCTTCGCCAGATCCGGAGAGCWTTCCGACGCGCCTTCACGCGCTGGTCTAACGTCATTCCTCTCACATTTGTGGAATCAGACGACTACRGTTTTGCTGAGATCAAGATAGGGTTTTACAGCGGCGACCACGGCGATGGCGAGGCTTTCGACGGGGTTCTTGGAGTGCTGGCGCATTCATTCTCGCCGGAGAGCGGGCGGCTACACCTGGATGCGGCGGAGACGTGGGCAGTGGACTTCGGGGAGAGTTGGTCGGAGGTAGCGGTGGATTTGGAGTCCGTGGCAACGCACGAGATTGGACACGTGCTTGGTCTGTCTCACAGTTCGGTTAGAGAGGCAGTTATGTATCCCAGCTTGAGGCCGAGAGAGAAGAGATATCGTCTCCATATTGATGACGTCATGGGAGTCCAATCTCTTTATGGCTCCAACCCTCATTTCAGATCTTCTGATATCTCGTCGCTTCAATCTGCTATCTCCGCAAATCATGCTCCTCCTCGCTTTCCACCATTCAGTATTCTTCTCTCTTGTGCATACCTTTTGTCTTTCTTTATAATTTTTTCCAGGTAA 1083 0.4968 MLHRRTFSFLFFITTTLVLMTFTSSHSLAHSIAISSRSMADMERFSNAGRGSNITGISEFKRYLWRFGYLDHNVNTTCNCFSEEFDAMLESALVRYQRKLGLQVTGKLDSITISEMITPRCGVPDSNDHTHTHTHMHSAKNFVYFPGKPRWSGPMPTTLTYAFSPEYTIHTLTLRQIRRAFRRAFTRWSNVIPLTFVESDDYXFAEIKIGFYSGDHGDGEAFDGVLGVLAHSFSPESGRLHLDAAETWAVDFGESWSEVAVDLESVATHEIGHVLGLSHSSVREAVMYPSLRPREKRYRLHIDDVMGVQSLYGSNPHFRSSDISSLQSAISANHAPPRFPPFSILLSCAYLLSFFIIFSR* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0494 360 ProSitePatterns Matrixins cysteine switch. 119 126 IPR021158 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Amo02g0494 360 Pfam Matrixin 156 313 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Amo02g0494 360 SMART col_5 147 314 IPR006026 GO:0006508|GO:0008237|GO:0008270
Amo02g0494 360 CDD ZnMc_MMP 150 313 IPR033739 GO:0008237|GO:0008270
Amo02g0494 360 Gene3D Collagenase (Catalytic Domain) 49 318 IPR024079 GO:0008237
Amo02g0494 360 PANTHER METALLOENDOPROTEINASE 4-MMP 28 338 - -
Amo02g0494 360 PRINTS Matrixin signature 116 129 IPR021190 GO:0004222|GO:0006508|GO:0008270
Amo02g0494 360 PRINTS Matrixin signature 181 196 IPR021190 GO:0004222|GO:0006508|GO:0008270
Amo02g0494 360 PRINTS Matrixin signature 205 233 IPR021190 GO:0004222|GO:0006508|GO:0008270
Amo02g0494 360 PRINTS Matrixin signature 300 313 IPR021190 GO:0004222|GO:0006508|GO:0008270
Amo02g0494 360 PRINTS Matrixin signature 266 291 IPR021190 GO:0004222|GO:0006508|GO:0008270
Amo02g0494 360 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 143 315 - -
Amo02g0494 360 Pfam Putative peptidoglycan binding domain 57 114 IPR002477 -
Amo02g0494 360 SUPERFAMILY PGBD-like 49 125 IPR036365 -
Amo02g0494 360 PANTHER MATRIX METALLOPROTEINASE 28 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0494 Amo-Chr2 6129751 6130833 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0494 - K07999 gmx:100781237 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0427 12 7016825 7017901 Amo02g0494 02 6129751 6130833 hybridization