Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0197 ATGGTGAAGAAGATTATGAGGTCTGATCCAAAGCAATTTTCAACAATGCAAATGCAGAACAATGTTTGTGTTAAGATTGCAGTGTCATTCCTCTGTTTAGGTCTTGCTTTTCGGCTTCTATTGCCGGATTCATTCAGCTTTTCATCATCATCATCATCATCATCATCATCATCATCATCAATGGTGATGGAAGAAACTCCTCCTCCAATGGCAGAGGAAAAAACAGAGTCCCCTGTTTTTCATCTTCCTCTTGAAGCATCATCTGATTCTGTTGATTTTTCATCAAACAACAACAAAAGCCAAAGCTCTCAAAATGGAGCAGAAAAATGTGATCTATTTGTGGGAGAATGGGTGGCAGATAAATCTGGTCCAATGTACACAAATGAGAGTTGCAATTTGATTGAGCATCATCAAAATTGCATGAAAAATGGAAGGTCTGATTCAGGGTACCTTTATTGGAGGTGGAGTCCAAGAGGGTGTGAACTACCAAAGTTTAATCCAAGAAAGTTTCTTGATTTCATGAGAAATAAATCATTTGCTTTCATTGGTGATTCCATCTCACGCAACCATGTGCAATCCCTTCTTTGCATTCTATCTCAGGTAGAACCAGCTGTTGAGATCTACCATGACAAAGAATACAGATCAAAGATATGGAAATTCCCATCTCACAACTTCACACTCTCAGTAATATGGACTCCTTTTCTCATCAAAGCAACAATTTTTGAGGACATGGATGGAGTTTCCTCTTCAGAGACACAGCTTCATCTTGACACTCTTGACACCCTTTGGACTAAACAATATGAAACTTTTGATTTTGTTTTGATTGGTGGCGGGAAATGGTTCCTCAAGACCGCGATTTACCACGAAAACAATACAATTGTTGGATGTCATTACTGTCCTGGAAAGAACCTAACTGATTTCGGATTTGACTATGCATACAGAAAGGCGATCGGGCTAGTTTTAGACTTCTTTGTGAAATCAAGTCACAAGGCGACAATTTTCTTCAGAACGACGACACCTGATCACTTTGAGAATGGCGAGTGGTTCAGTGGAGGGTATTGTAATAGAACAGTTCCTTTCAAAGAGGGTCAAATAGAAATGATTGATGTAGATTCCACCATGAGAGGTATTGAACTTGAAGAATTCGCGAAAGCAGTATCGTCAGGATCGGATAAAGCTGCGAAATTGAAACTTCTGGACACAACTTTTCTATCATTGTTGAGACCAGATGGTCATCCAGGACCATACAGACAGTACCAACCCTTTGCCAAAGATAAGAATGCAAAAGTTCAAAATGATTGCTTACATTGGTGTTTGCCAGGACCAATTGATTCTTGGAATGACATAATAATGGAAATGTTAGTGAATCCTTAA 1374 0.3908 MVKKIMRSDPKQFSTMQMQNNVCVKIAVSFLCLGLAFRLLLPDSFSFSSSSSSSSSSSSSMVMEETPPPMAEEKTESPVFHLPLEASSDSVDFSSNNNKSQSSQNGAEKCDLFVGEWVADKSGPMYTNESCNLIEHHQNCMKNGRSDSGYLYWRWSPRGCELPKFNPRKFLDFMRNKSFAFIGDSISRNHVQSLLCILSQVEPAVEIYHDKEYRSKIWKFPSHNFTLSVIWTPFLIKATIFEDMDGVSSSETQLHLDTLDTLWTKQYETFDFVLIGGGKWFLKTAIYHENNTIVGCHYCPGKNLTDFGFDYAYRKAIGLVLDFFVKSSHKATIFFRTTTPDHFENGEWFSGGYCNRTVPFKEGQIEMIDVDSTMRGIELEEFAKAVSSGSDKAAKLKLLDTTFLSLLRPDGHPGPYRQYQPFAKDKNAKVQNDCLHWCLPGPIDSWNDIIMEMLVNP* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0197 457 Pfam PMR5 N terminal Domain 108 161 IPR025846 -
Amo12g0197 457 MobiDBLite consensus disorder prediction 49 64 - -
Amo12g0197 457 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 162 453 IPR026057 GO:0016740
Amo12g0197 457 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 56 455 IPR029962 GO:0016413
Amo12g0197 457 MobiDBLite consensus disorder prediction 49 76 - -
Amo12g0197 457 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 26 56 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0197 Amo-Chr12 2908480 2913067 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0197 - - gmx:100305942 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0197 12 2908480 2913067 Amo12g0197 12 2908480 2913067 ECH
Amo16g1255 16 21311920 21313568 Amo12g0197 12 2908480 2913067 PCT
Amo12g0197 12 2908480 2913067 Amo16g1255 16 21311920 21313568 PCT