Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0131 ATGAAAATGAATGGTGTTGAGGCTGAAAAAAAACAATATAATGAGAGTGAGAAAATAATAGGGTATTATGATGATGATGTGAATGAGAAAATAGATTATGTGTTTAAGGTTGTGGTGATTGGAGATTCATCAGTGGGAAAGACTCAAATGCTCTCAAGGTTTGCAAAGAATGAGTTTTGCTTTGACTCTAAGTCAACCATTGGTGTTGAGTTCCAAACTAGGACTCTCACCATTAATGGCAAAGTCATCAAGGCTCAGATCTGGGATACTGCTGGCCAAGAAAGGTACAGGGCAGTGACAAGTGCATATTACAGAGGAGCATTAGGGGCAATGTTGGTATATGACATAACAAAGAGAGAATCATTTGATCATGTTACAAGGTGGATTGAAGAACTAAGATCACATGCAGATAGCTCCATTGTGATCATGTTAATTGGTAACAAATGTGACCTTGTTGACCTAAGAATGGTGTCAACTGAAGATGCAATTGAATTTGCTGAAGAACAAGGCCTTTTCTTCTCTGAGACTTCAGCACTCAATGGTAACAATGTGGAAAGTGCTTTTCTTAAATTGCTTCAAGAGATTCATAATAGGGTTGTTTCTAAGAAGAAAAGTTTGGAATGTGGTAGTGGTGATGATGACATTATTGGTAATGGTGGTAATAATAGTAGCAACACACTTAAAGGATCTAAGATTGATGTAATTTTAGGTCATGAATTGGAAATTAGTGAGATGAAGAAGTTGTCTTCATGCTCATGTTGA 762 0.3675 MKMNGVEAEKKQYNESEKIIGYYDDDVNEKIDYVFKVVVIGDSSVGKTQMLSRFAKNEFCFDSKSTIGVEFQTRTLTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRESFDHVTRWIEELRSHADSSIVIMLIGNKCDLVDLRMVSTEDAIEFAEEQGLFFSETSALNGNNVESAFLKLLQEIHNRVVSKKKSLECGSGDDDIIGNGGNNSSNTLKGSKIDVILGHELEISEMKKLSSCSC* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0131 253 TIGRFAM small_GTP: small GTP-binding protein domain 34 188 IPR005225 GO:0005525
Amo12g0131 253 PRINTS Transforming protein P21 ras signature 35 56 - -
Amo12g0131 253 PRINTS Transforming protein P21 ras signature 58 74 - -
Amo12g0131 253 PRINTS Transforming protein P21 ras signature 76 98 - -
Amo12g0131 253 PRINTS Transforming protein P21 ras signature 138 151 - -
Amo12g0131 253 PRINTS Transforming protein P21 ras signature 173 195 - -
Amo12g0131 253 CDD Rab11_like 32 196 - -
Amo12g0131 253 ProSiteProfiles small GTPase Ras family profile. 29 236 IPR001806 GO:0003924|GO:0005525
Amo12g0131 253 PANTHER - 5 253 - -
Amo12g0131 253 Gene3D - 27 214 IPR027417 -
Amo12g0131 253 ProSiteProfiles small GTPase Rho family profile. 28 200 - -
Amo12g0131 253 PANTHER RAS-RELATED PROTEIN RABA3 5 253 - -
Amo12g0131 253 SMART rab_sub_5 35 198 - -
Amo12g0131 253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 206 IPR027417 -
Amo12g0131 253 SMART ran_sub_2 40 248 - -
Amo12g0131 253 SMART rho_sub_3 37 194 IPR001806 GO:0003924|GO:0005525
Amo12g0131 253 SMART ras_sub_4 32 198 - -
Amo12g0131 253 Pfam Ras family 36 196 IPR001806 GO:0003924|GO:0005525
Amo12g0131 253 ProSiteProfiles small GTPase Rab1 family profile. 30 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0131 Amo-Chr12 1932687 1934236 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0131 K07904 - gmx:100799439 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0131 12 1932687 1934236 Amo02g0475 02 5788166 5790439 hybridization