Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0475 GGACCAATTAAAGACTTAGACCAACAAACACATAGTTACCTTTTTTATTTCAAGCTTCTTAGTGTTCTTGACATGAAAATGAATGGTGTTGAGGCTGAAAAAAAACAATATAATGAGAGTGAGAAAATAATAGGGTATTATGATGATGATGTGAATGAGAAAATAGATTATGTGTTTAAGGTTGTGGTGATTGGAGATTCATCAGTGGGAAAGACTCAAATGCTCTCAAGATTTGCAAAGAATGAGTTTTGCTTTGACTCTAAGTCAACCATTGGTGTTGAATTCCAAACTAGGACTCTCACCATTAATGGCAAAGTCATCAAGGCTCAGATCTGGGATACTGCTGGCCAAGAAAGGTACAGGGCAGTGACAAGTGCATATTACAGAGGAGCATTAGGGGCAATGTTGGTATATGACATAACAAAGAGAGACTCATTTGATCATGTTACAAGGTGGATTGAAGAACTAAGATCACATGCAGATAGCTCCATTGTGATCATGTTAATTGGTAACAAATGTGACCTTGTTGACCTAAGAATGGTGTCAACTGAAGATGCAATTGAATTTGCTGAAGAACAAGGCCTTTTCTTCTCTGAGACTTCAGCACTCAATGGTAACAATGTGGAAAGTGCTTTTCTTAAATTGCTTCAAGAGATTCATAATAGGGTTGTTTCTAAGAAGAAAAGTTTGGAATGTGGTAGTGGTGATGATGACATTATTGGTAATGGTGGTAATAATAGTAGCAACACACTTAAAGGATCTAAGATTGATGTAATTTTAGGTCATGAATTGGAAATTAGTGAGATGAAGAAGTTGTCTTCATGCTCATGTTAA 834 0.3621 GPIKDLDQQTHSYLFYFKLLSVLDMKMNGVEAEKKQYNESEKIIGYYDDDVNEKIDYVFKVVVIGDSSVGKTQMLSRFAKNEFCFDSKSTIGVEFQTRTLTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRDSFDHVTRWIEELRSHADSSIVIMLIGNKCDLVDLRMVSTEDAIEFAEEQGLFFSETSALNGNNVESAFLKLLQEIHNRVVSKKKSLECGSGDDDIIGNGGNNSSNTLKGSKIDVILGHELEISEMKKLSSCSC* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0475 277 CDD Rab11_like 56 220 - -
Amo02g0475 277 PANTHER RAS-RELATED PROTEIN RABA3 27 277 - -
Amo02g0475 277 SMART rab_sub_5 59 222 - -
Amo02g0475 277 PRINTS Transforming protein P21 ras signature 197 219 - -
Amo02g0475 277 PRINTS Transforming protein P21 ras signature 100 122 - -
Amo02g0475 277 PRINTS Transforming protein P21 ras signature 162 175 - -
Amo02g0475 277 PRINTS Transforming protein P21 ras signature 82 98 - -
Amo02g0475 277 PRINTS Transforming protein P21 ras signature 59 80 - -
Amo02g0475 277 SMART rho_sub_3 61 218 IPR001806 GO:0003924|GO:0005525
Amo02g0475 277 ProSiteProfiles small GTPase Rab1 family profile. 54 267 - -
Amo02g0475 277 Pfam Ras family 60 220 IPR001806 GO:0003924|GO:0005525
Amo02g0475 277 TIGRFAM small_GTP: small GTP-binding protein domain 58 212 IPR005225 GO:0005525
Amo02g0475 277 SMART ran_sub_2 64 272 - -
Amo02g0475 277 Gene3D - 51 238 IPR027417 -
Amo02g0475 277 SMART ras_sub_4 56 222 - -
Amo02g0475 277 ProSiteProfiles small GTPase Rho family profile. 52 224 - -
Amo02g0475 277 PANTHER - 27 277 - -
Amo02g0475 277 ProSiteProfiles small GTPase Ras family profile. 53 260 IPR001806 GO:0003924|GO:0005525
Amo02g0475 277 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 230 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0475 Amo-Chr2 5788166 5790439 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0475 K07904 - gmx:100799439 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0131 12 1932687 1934236 Amo02g0475 02 5788166 5790439 hybridization