Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2476 ATGTCGGAGGTTCAAATCCGGCAACTTAACCAGTTGAGGGAGATATTCGCTCGCTTCGACATGGATTCAGATGGAAGTCTGACCATGTTGGAGCTAGCGGCACTCCTGAGGTCACTCGGGATGAAACCCTCGGGTGACCAACTCCAAGCACTGCTTAAAAGGATGGACTCCAATGGCAATGGCTCCGTCGAGTTCGATGAACTCGTCCGAGCCATAATGCCGGACATGGATGCTCAGATTCTGCTTAATCAAGAACAGTTACTTGCCATGTTTAAGTGCTTTGATCGCGACGGCAACGGCTATATCTCGGCTGCCGAGTTGGCCGGTGCAATGGCGAAGATGGGCCAGCCGTTAACGTACCGCGAGCTGACTGAGATGATCAAGGAGCTGACACGGATGGTGATGGTGTTATCAGCTTCAATGAATTTGCAGCTATCATGTCTCGCTCTGCATCTGATTTCTTAG 465 0.5097 MSEVQIRQLNQLREIFARFDMDSDGSLTMLELAALLRSLGMKPSGDQLQALLKRMDSNGNGSVEFDELVRAIMPDMDAQILLNQEQLLAMFKCFDRDGNGYISAAELAGAMAKMGQPLTYRELTEMIKELTRMVMVLSASMNLQLSCLALHLIS* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2476 154 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Amo11g2476 154 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Amo11g2476 154 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 3 129 - -
Amo11g2476 154 Pfam EF hand 88 114 IPR002048 GO:0005509
Amo11g2476 154 Pfam EF-hand domain pair 10 72 IPR002048 GO:0005509
Amo11g2476 154 SUPERFAMILY EF-hand 6 130 IPR011992 -
Amo11g2476 154 CDD EFh 11 73 IPR002048 GO:0005509
Amo11g2476 154 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Amo11g2476 154 PANTHER CALCIUM BINDING PROTEIN 3 129 - -
Amo11g2476 154 SMART efh_1 11 39 IPR002048 GO:0005509
Amo11g2476 154 SMART efh_1 47 75 IPR002048 GO:0005509
Amo11g2476 154 SMART efh_1 86 114 IPR002048 GO:0005509
Amo11g2476 154 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Amo11g2476 154 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Amo11g2476 154 Gene3D - 2 138 - -
Amo11g2476 154 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2476 Amo-Chr11 130427977 130429028 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2476 11 68 EF-hand Containing Proteins AT1G18530 36.207 1.21e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2476 K13448 - gmx:100795885 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2476 11 130427977 130429028 Amo11g2476 11 130427977 130429028 ECH
Amo01g4040 01 114639035 114639787 Amo11g2476 11 130427977 130429028 hybridization