Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4040 ATGTCGGAGGTTCAAATCCGGCAACTTAACCAGTTGAGGGAGATATTCGCTCGCTTCGACATGGATTCAGATGGAAGTCTGACCATGTTGGAGCTAGCGGCACTCCTGAGGTCACTCGGGATGAAACCCTCGGGTGACCAACTCCAAGCACTGCTTAAAAGGATGGACTCCAATGGCAATGGCTCCGTCGAGTTCGATGAACTCGTCCGAGCCATAATGCCGGACATGGATGCTCAGATTCTGCTTAATCAAGAACAGTTACTTGCCATGTTTAAGTGCTTTGATCGCGACGGCAACGGCTATATCTCGGCTGCCGAGTTGGCCGGTGCAATGGCGAAGATGGGCCAGCCGTTAACGTACCGCGAGCTGACTGAGATGATCAAGGAAGCTGACACGGATGGTGATGGTGTTATCAGCTTCAATGAATTTGCAGCTATCATGTCTCGCTCTGCATCTGATTTCTTAGGACTCAAGAAGAAAACAAGTTCATTGGACTAA 498 0.498 MSEVQIRQLNQLREIFARFDMDSDGSLTMLELAALLRSLGMKPSGDQLQALLKRMDSNGNGSVEFDELVRAIMPDMDAQILLNQEQLLAMFKCFDRDGNGYISAAELAGAMAKMGQPLTYRELTEMIKEADTDGDGVISFNEFAAIMSRSASDFLGLKKKTSSLD* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4040 165 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Amo01g4040 165 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 3 158 - -
Amo01g4040 165 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Amo01g4040 165 Gene3D - 78 160 - -
Amo01g4040 165 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Amo01g4040 165 CDD EFh 11 73 IPR002048 GO:0005509
Amo01g4040 165 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Amo01g4040 165 CDD EFh 86 148 IPR002048 GO:0005509
Amo01g4040 165 Pfam EF-hand domain pair 10 72 IPR002048 GO:0005509
Amo01g4040 165 Pfam EF-hand domain pair 85 148 IPR002048 GO:0005509
Amo01g4040 165 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Amo01g4040 165 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Amo01g4040 165 Gene3D - 2 77 - -
Amo01g4040 165 SUPERFAMILY EF-hand 6 149 IPR011992 -
Amo01g4040 165 PANTHER CALCIUM BINDING PROTEIN 3 158 - -
Amo01g4040 165 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Amo01g4040 165 SMART efh_1 47 75 IPR002048 GO:0005509
Amo01g4040 165 SMART efh_1 86 114 IPR002048 GO:0005509
Amo01g4040 165 SMART efh_1 11 39 IPR002048 GO:0005509
Amo01g4040 165 SMART efh_1 122 150 IPR002048 GO:0005509
Amo01g4040 165 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4040 Amo-Chr1 114639035 114639787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4040 8 158 EF-hand Containing Proteins AT1G18530 75.497 8.98e-84 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4040 K13448 - gmx:100795885 272.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g4040 01 114639035 114639787 Amo11g2476 11 130427977 130429028 hybridization