Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2118 ATGATGATGATGCCTTTCAAGATGAGTGAGATGATGGCAACAATGGGTTCAACCTTAGCAAGCTTCATGTTTGTTTGGGCAATCATACGCCAGTATTGTCCATATGAAGTTAGAAGGTTCTTTGAGAAATACACAGAGAGAATTATGGGCTATTTCTACCCTTATATAAGAATCTCCTTCCATGAATTCTTGGGTGATAGGCTCAAGAGAAGTGAGGCTTATGCTGCTGTTGAGGCATACCTCAGTGCCAACACATCAAAGAGTGCAAAGAGACTCAAAGCTGAGATGGGAAAAGATAGCACCAACTTGGTTCTCACCATGGACGAGTATGAGAGAGTCACTGATGATTATGAGGGTGCAAAAGTTTGGTGGTTATCTAGCAAGGTTGCGTCACCACCAAGGTCCATGTCATACTACCCTGAACAAGAGAAGAGGTTCTACAAGCTCAGCTTCCACATGAAGTATAGGGACTTGATCACAAGTTCGTATTTGGAACACGTTATGAGGGAAGGGAAGGAGATTCGGCTGAGGAATCGGCAGAGGAAGTTGTACACAAATAGCCCTGGATACAAGTGGCCAAGTTACAAGCAAACAATGTGGAGCCACATTGTGTTTGAGCACCCTGCAACCTTTGAGACAATGGCTATGGATTGTGAGAAGAAGAAGGAGATCATTGAGGATCTGGTTACTTTTAGCAAGAGCAAAGATTTTTATGCAAGGATTGGGAAAGCTTGGAAGAGGGGTTACCTCCTTTATGGCCCTCCTGGTACTGGAAAATCCACAATGATTGCAGCAATGGCGAATTTGTTAGGATATGATGTGTATGACTTGGAGCTTACAGCAGTTAAGGACAACACTGAGCTGAGGAAGCTCTTGATTGAGACGACGAGTAAGTCTATAATTGTTATTGAGGACATTGATTGCTCGCTTGATCTTACAGGGCAGAGGAAGAAGAAAGGTGGCGACAAGTTGTCGGATGATGAGAGTGAGAAGGTGAGTTTAGAACTTAGGAAAGAAGGGAAGGAAGATGGAGGTTGTGGCAGCAGCAAGGTGACGCTTTCGGGGCTATTGAATTTCATTGATGGGATATGGTCTGCTTGTGGTGGGGAGAGGTTGATTGTGTTCACTACTAACTATGTGGAGAAGCTTGACCCGGCGCTGATTCGAAGGGGCAGGATGGACAAGCACATAGAGTTGTCCCATTGCAGCTTTGATGGATTCAAAGTGCTTGCCAAGAATTACTTGAAGCTCGAAACTCATCCCATGTTCGACACCATTCGGAAGCTGATTGGGGAGGTCAAGATCACTCCAGCCGATGTTGCTGAGAACCTTATGCCTAAGTCTCCACTGGATGATGCAGACAAGTGTCTTTCTTGCTTGATTGAATCACTTGAGGAAGCTGCTGCTGCTATGAAAGCTGAGGAACTGAGGCAGAGCTGCGCGAAAAAGGAAGATGAGGAACTGAAGCATGCCAATGATCACATTAAGGAAGATGAGGGACTAAAGCACACAAATCACACTAAGGAAAATGGTGAGGTATGGGAGGACTTAGAACCTGCTCAAGCAAAAAACCAAAGCCTATAG 1584 0.4489 MMMMPFKMSEMMATMGSTLASFMFVWAIIRQYCPYEVRRFFEKYTERIMGYFYPYIRISFHEFLGDRLKRSEAYAAVEAYLSANTSKSAKRLKAEMGKDSTNLVLTMDEYERVTDDYEGAKVWWLSSKVASPPRSMSYYPEQEKRFYKLSFHMKYRDLITSSYLEHVMREGKEIRLRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFETMAMDCEKKKEIIEDLVTFSKSKDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLGYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKGGDKLSDDESEKVSLELRKEGKEDGGCGSSKVTLSGLLNFIDGIWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSHCSFDGFKVLAKNYLKLETHPMFDTIRKLIGEVKITPADVAENLMPKSPLDDADKCLSCLIESLEEAAAAMKAEELRQSCAKKEDEELKHANDHIKEDEGLKHTNHTKENGEVWEDLEPAQAKNQSL* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2118 527 Pfam ATPase family associated with various cellular activities (AAA) 250 399 IPR003959 GO:0005524|GO:0016887
Amo11g2118 527 MobiDBLite consensus disorder prediction 480 527 - -
Amo11g2118 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 449 IPR027417 -
Amo11g2118 527 ProSitePatterns AAA-protein family signature. 371 390 IPR003960 GO:0005524|GO:0016887
Amo11g2118 527 SMART AAA_5 245 403 IPR003593 -
Amo11g2118 527 CDD AAA 246 400 - -
Amo11g2118 527 PANTHER BCS1 AAA-TYPE ATPASE 9 496 - -
Amo11g2118 527 PANTHER ATP BINDING PROTEIN 9 496 - -
Amo11g2118 527 MobiDBLite consensus disorder prediction 480 516 - -
Amo11g2118 527 Gene3D - 397 458 - -
Amo11g2118 527 Pfam Domain associated at C-terminal with AAA 34 126 IPR025753 -
Amo11g2118 527 Gene3D - 206 396 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2118 Amo-Chr11 116471183 116473450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2118 218 416 Miscellaneous Gene Families AT5G53170 27.136 6.54e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2118 - - gmx:100798176 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2118 11 116471183 116473450 Amo11g2118 11 116471183 116473450 ECH
Amo01g4170 01 116993491 116995783 Amo11g2118 11 116471183 116473450 hybridization