Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4170 ATGATGATGATGCCTTTCAAGATGAGTGAGATGATGGCAACAATGGGTTCAACCTTAGCAAGCTTCATGTTTGTTTGGGCAATCATACGCCAGTATTGTCCATATGAAGTTAGAAGGTTCTTTGAGAAATACACAGAWAGAATTATGGGCTATTTCTACCCTTATATAAGAATCTCCTTCCATGAATTCTTGGGTGATAGGCTCAAGAGAAGTGAGGCTTATGCTGCTGTTGAGGCATACCTCAGTGCCAACACATCAAAGAGTGCAAAGAGACTCAAAGCTGAGATGGGAAAAGATAGCACCAACTTGGTTCTCACCATGGACGAGTATGAGAGAGTCACTGATGATTATGAGGGTGCAAAAGTTTGGTGGTTATCTAGCAAGGTTGCGTCACCACCAAGGTCCATGTCATACTACCCTGAACAAGAGAAGAGGTTCTACAAGCTCAGCTTCCACATGAAGTATAGGGACTTGATCACAAGTTCGTATTTGGAACACGTTATGAGGGAAGGGAAGGAGATTCGGCTGAGGAATCGGCAGAGGAAGTTGTACACAAATAGCCCTGGATACAAGTGGCCAAGTTACAAGCAAACAATGTGGAGCCACATTGTGTTTGAGCACCCTGCAACCTTTGAGACAATGGCTATGGATTWTGAGAAGAAGAAGGAGATCATTGAGGATRTGGTTACTTTTAGCAAGAGCAAAGATTTTTATGCAAGGATTGGGAAAGCTTGGAAGAGGGGTTACCTCCTTTATGGCCCTCCTGGTACTGGAAAATCCACAATGATTGCAGCAATGGCGAATTTGTTAGGATATGATGTGTATGACTTGGAGCTTACAGCAGTTAAGGACAACACTGAGCTGAGGAAGCTCTTGATTGAGACGACGAGTAAGTCTATAATTGTTATTGAGGACATTGATTGCTCGCTTGATCTTACAGGGCAGAGGAAGAAGAAAGGTGGCGACAAGTTGTCGGATGATGAGAGTGAGAAGGTGAGTTTAGAACTTAGGAAAGAAGGGAAGGAAGATGGAGGTTGTGGCAGCAGCAAGGTGACGCTTTCGGGGCTATTGAATTTCATTGATGGGATATGGTCTGCTTGTGGTGGGGAGAGGTTGATTGTGTTCACTACTAACTATGTGGAGAAGCTTGACCCGGCGCTGATTCGAAGGGGCAGGATGGACAAGCACATAGAGTTGTCCCATTGCAGCTTTGATGGATTCAAAGTGCTTGCCAAGAATTACTTGAAGCTCGAAACTCATCCCATGTTCGACACCATTCGGAAGCTGATTGGGGAGGTCAAGATCACTCCAGCCGATGTTGCTGAGAACCTTATGCCTAAGTCTCCACTGGATGATGCAGACAAGTGTCTTTCTTGCTTGATTGAATCACTTGAGGAAGCTGCTGCTGCTATGAAAGCTGAGGAACTGAGGCAGAGCTGCGCGAAAAAGGAAGARGAGGAACTGAAGCATGCCAATGATCACATTAAGGAAGATGAGGGACTAAAGCACACAAATCACACTAAGGAAAATGGTGAGGTATGGGAGGACTTAGAACCTGCTCAAGCAAAAAACCAAAGCCTATAG 1584 0.447 MMMMPFKMSEMMATMGSTLASFMFVWAIIRQYCPYEVRRFFEKYTXRIMGYFYPYIRISFHEFLGDRLKRSEAYAAVEAYLSANTSKSAKRLKAEMGKDSTNLVLTMDEYERVTDDYEGAKVWWLSSKVASPPRSMSYYPEQEKRFYKLSFHMKYRDLITSSYLEHVMREGKEIRLRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFETMAMDXEKKKEIIEDXVTFSKSKDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLGYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKGGDKLSDDESEKVSLELRKEGKEDGGCGSSKVTLSGLLNFIDGIWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSHCSFDGFKVLAKNYLKLETHPMFDTIRKLIGEVKITPADVAENLMPKSPLDDADKCLSCLIESLEEAAAAMKAEELRQSCAKKEEEELKHANDHIKEDEGLKHTNHTKENGEVWEDLEPAQAKNQSL* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4170 527 MobiDBLite consensus disorder prediction 481 516 - -
Amo01g4170 527 Gene3D - 397 458 - -
Amo01g4170 527 Gene3D - 205 396 IPR027417 -
Amo01g4170 527 Pfam ATPase family associated with various cellular activities (AAA) 250 399 IPR003959 GO:0005524|GO:0016887
Amo01g4170 527 Pfam Domain associated at C-terminal with AAA 34 126 IPR025753 -
Amo01g4170 527 PANTHER ATP BINDING PROTEIN 9 496 - -
Amo01g4170 527 Coils Coil 481 501 - -
Amo01g4170 527 ProSitePatterns AAA-protein family signature. 371 390 IPR003960 GO:0005524|GO:0016887
Amo01g4170 527 MobiDBLite consensus disorder prediction 481 527 - -
Amo01g4170 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 449 IPR027417 -
Amo01g4170 527 SMART AAA_5 245 403 IPR003593 -
Amo01g4170 527 CDD AAA 246 400 - -
Amo01g4170 527 PANTHER BCS1 AAA-TYPE ATPASE 9 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4170 Amo-Chr1 116993491 116995783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4170 210 426 Miscellaneous Gene Families AT5G58870 27.876 2.92e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4170 - - gmx:100798176 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g4170 01 116993491 116995783 Amo11g2118 11 116471183 116473450 hybridization