Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2079 ATGACAAGCGCCAGAACCCTTGTTCTGATTCACCTCCTTCACACGGCGATGAATCCGGGGCCGAATTCAGGGTCTCGGAATTTGAAACCTGAGAGTGCTAATTTGGTTCCTTGGACTGGTAATTGCCGAGCTTGGAGGGCTGATGATGCATTTCGACCCCAGAGTTTGCCCAATTTGTCCAAGCAGCACAGCTTGCCAATCTCCGACCGACGTTGCGGTGGTGGTGTCCTTTGGAGTCGCTCTGCTATGCCATCATCATGTCCTATATGCTGTGAGGATCTCGATTTGACAGACACGAGTTTCTTGCCTTGCTTGTGTGGCTTTCGGCTTTGCCTCTTTTGCCATAAGAGGATTCTTGAAGAAGATGCTCGCTGCCCTGGCTGCAGGAAGCCTTATGAGTGCGAAGCTGTTGTTGAGACGGAGCCTAGTGTGCTTGGAGGCAGTCTCACCCTTCGGTTGGCTCGATCTTGTAGCATGGTCGAAAGGTCTTGA 492 0.5183 MTSARTLVLIHLLHTAMNPGPNSGSRNLKPESANLVPWTGNCRAWRADDAFRPQSLPNLSKQHSLPISDRRCGGGVLWSRSAMPSSCPICCEDLDLTDTSFLPCLCGFRLCLFCHKRILEEDARCPGCRKPYECEAVVETEPSVLGGSLTLRLARSCSMVERS* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2079 163 CDD mRING-HC-C4C4_CNOT4 87 130 IPR039515 -
Amo11g2079 163 SUPERFAMILY RING/U-box 85 136 - -
Amo11g2079 163 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 21 161 - -
Amo11g2079 163 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 21 161 IPR039780 GO:0004842|GO:0030014
Amo11g2079 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 144 IPR013083 -
Amo11g2079 163 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Amo11g2079 163 Pfam RING/Ubox like zinc-binding domain 87 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2079 Amo-Chr11 113951122 113951654 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2079 - - ahf:112695276 313.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2079 11 113951122 113951654 Amo11g2079 11 113951122 113951654 ECH
Amo01g2451 01 82111379 82113277 Amo11g2079 11 113951122 113951654 hybridization