Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2451 ATGGTTTCTGATTCAGTTCCCGCCGCTCTTATTCCTTCAGCTGCAAACACTAAGAACCTCGGCAAGAAGAAGAGGACCAACAGGTCTGCAAAATTGAAACAGAACAAAATTGAAGCGCGTCGTGAGCAATGGTTATCCCAAGGTTCTGTCAAGAGCAAGGGGTGCAAGGATGTAATCGACAGTGATGGCCACGAGCTGCCATTGTCATCCGGGAATCATGGCAAGCGTCCGCTGGAGCAGTTGGAGACTAGGCACAGGGTGGAAGAAGACGACGGGTTGATCCATCAACACAGCGATTCGGAATCACCAGCTAACAGCCCCACAGGCAATGATTCTGGGACGAATTTCACTGGAAGCAGTGGCAGCAGTAGCGGGAGCAGTAGCAGTAGGAGCAGCAGTAGTTACAGCAGCGCTGGGTGTTGCTCTGGAAACATAACAGAAGAAGATGACGATGAAGAAGAGGAAGGAGGAGGGGAAGAAGAAGGTGATGATGGTTGCTTGGATGATTGGGAGGCTGTGGCAGATGCTCTAGCCGCCAATGACAAGCGCCAGAACCCTTGTTCTGATTCACCTCCTTCACACGGCGATGAATCCGTTGTGCAAATGGCTTCATCGAACTGTGAAGATCCAAACAGGGGGCCGAATTCAGGGTCTCGGAATTTGAAACCTGAGAGTGCTAATTTGGTTCCTTGGACTGGTAATTGCCGAGCTTGGAGGGCTGATGATGCATTTCGACCCCAGAGTTTGCCCAATTTGTCCAAGCAGCACAGCTTGCCAATCTCCGACCGACGTTGCGGTGGTGGTGTCCTTTGGAGTCGCTCTGCTATGCCATCATCATGTCCTATATGCTGTGAGGATCTCGATTTGACAGACACGAGTTTCTTGCCTTGCTTGTGTGGCTTTCGGCTTTGCCTCTTTTGCCATAAGAGGATTCTTGAAGAAGATGCTCGCTGCCCTGGCTGCAGGAAGCCTTATGAGTGCGAAGCTGTTGTTGAGACGGAGCCTAGTGTGCTTGGAGGCAGTCTCACCCTTCGGTTGGCTCGATCTTGTAGCATGGTCGAAAGGTCTTGA 1071 0.5135 MVSDSVPAALIPSAANTKNLGKKKRTNRSAKLKQNKIEARREQWLSQGSVKSKGCKDVIDSDGHELPLSSGNHGKRPLEQLETRHRVEEDDGLIHQHSDSESPANSPTGNDSGTNFTGSSGSSSGSSSSRSSSSYSSAGCCSGNITEEDDDEEEEGGGEEEGDDGCLDDWEAVADALAANDKRQNPCSDSPPSHGDESVVQMASSNCEDPNRGPNSGSRNLKPESANLVPWTGNCRAWRADDAFRPQSLPNLSKQHSLPISDRRCGGGVLWSRSAMPSSCPICCEDLDLTDTSFLPCLCGFRLCLFCHKRILEEDARCPGCRKPYECEAVVETEPSVLGGSLTLRLARSCSMVERS* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2451 356 MobiDBLite consensus disorder prediction 15 166 - -
Amo01g2451 356 CDD mRING-HC-C4C4_CNOT4 280 323 IPR039515 -
Amo01g2451 356 Pfam RING/Ubox like zinc-binding domain 280 326 - -
Amo01g2451 356 ProSiteProfiles Zinc finger RING-type profile. 280 322 IPR001841 -
Amo01g2451 356 MobiDBLite consensus disorder prediction 183 227 - -
Amo01g2451 356 MobiDBLite consensus disorder prediction 98 143 - -
Amo01g2451 356 SUPERFAMILY RING/U-box 278 329 - -
Amo01g2451 356 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 14 354 - -
Amo01g2451 356 MobiDBLite consensus disorder prediction 77 97 - -
Amo01g2451 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 337 IPR013083 -
Amo01g2451 356 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 14 354 IPR039780 GO:0004842|GO:0030014
Amo01g2451 356 MobiDBLite consensus disorder prediction 145 166 - -
Amo01g2451 356 MobiDBLite consensus disorder prediction 181 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2451 Amo-Chr1 82111379 82113277 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2451 - - ahf:112695276 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2451 01 82111379 82113277 Amo11g2079 11 113951122 113951654 hybridization