Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2067 CCCAGCTTGGCTTCAGTACCTTCTCTTAACAAGAACTACCATTATTCTTGTTCTAATTATTCAACCGCCTCATACAACTGCATCGCAACCCTAAAAGGACACAACTACTACCCATCCTCCTTAACCCTCTCCGCTAAATTCCTCTACAGTGGCTCCTCCGATAGAGAAATTAGGTCATGGTCCAAACAATCATTATTAACTACCACTAATAATATAGTCCTTGCTGGGAAAGGTGCAGTCAAGTCTCTAGTTGTTCACTCCGACAAGCTCTTTAGTGCTCACCAAGATAACAAAATTAGGCTTCAGTACACGCGTTTGGCCACGCTTCCAACGCTCAGCGACCGCGTCTCGAAGATACTACTCCCCAAAAACCACGTTAGAATCCGGAGGCACAAAAGGTCCACGTGGGTTCACCACGTAGACGCAGTGTCTTGTCTCGCCCTGTCCCATGACGGAGCCTTGCTATACTCTGTCTCATGGGACAGGACGATCAAGATTTGGCGAACCAGAGACTTTGCGTGTTTGGAATCAGTGATGAATGCACACGATGATGCCATCAACGCAGTCGCAGTTTCCAACGATGGACGAGTCTACACAGGATCGGCGGACAAAAGAATCAAGGTTTGGAAGAAGAAGAAAGGCGACGGCCAAGGAGTAGTGGGAGAGAAAAGCAAAAGCAAAAACAAACACTACCTTGTGGACACGTTGGAGAAACACAAGTCTGGGATCAACGCTTTGGCGCTTAACGGCGACGGTTCGTTACTATATTCCGGGGCATGTGATAGATCAATACTGTTATGGGCGAGGAAGGAAGAAGACAAAGAAAGAGAAGGTGGTGATGGAAAAATGGTGGTGGTGGGTGCGTTAGGGGGCATGGTAGGTCTATACTTTGCTTGGTGGTGGTGA 906 0.4768 PSLASVPSLNKNYHYSCSNYSTASYNCIATLKGHNYYPSSLTLSAKFLYSGSSDREIRSWSKQSLLTTTNNIVLAGKGAVKSLVVHSDKLFSAHQDNKIRLQYTRLATLPTLSDRVSKILLPKNHVRIRRHKRSTWVHHVDAVSCLALSHDGALLYSVSWDRTIKIWRTRDFACLESVMNAHDDAINAVAVSNDGRVYTGSADKRIKVWKKKKGDGQGVVGEKSKSKNKHYLVDTLEKHKSGINALALNGDGSLLYSGACDRSILLWARKEEDKEREGGDGKMVVVGALGGMVGLYFAWWW* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2067 301 SMART WD40_4 67 103 IPR001680 GO:0005515
Amo11g2067 301 SMART WD40_4 129 168 IPR001680 GO:0005515
Amo11g2067 301 SMART WD40_4 24 61 IPR001680 GO:0005515
Amo11g2067 301 SMART WD40_4 172 210 IPR001680 GO:0005515
Amo11g2067 301 SMART WD40_4 229 268 IPR001680 GO:0005515
Amo11g2067 301 Pfam WD domain, G-beta repeat 136 167 IPR001680 GO:0005515
Amo11g2067 301 Pfam WD domain, G-beta repeat 179 210 IPR001680 GO:0005515
Amo11g2067 301 Pfam WD domain, G-beta repeat 26 61 IPR001680 GO:0005515
Amo11g2067 301 Pfam WD domain, G-beta repeat 233 267 IPR001680 GO:0005515
Amo11g2067 301 Gene3D - 10 127 IPR015943 GO:0005515
Amo11g2067 301 SUPERFAMILY WD40 repeat-like 9 295 IPR036322 GO:0005515
Amo11g2067 301 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 236 267 - -
Amo11g2067 301 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 210 IPR001680 GO:0005515
Amo11g2067 301 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 136 167 - -
Amo11g2067 301 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 179 210 - -
Amo11g2067 301 ProSiteProfiles Trp-Asp (WD) repeats profile. 136 177 IPR001680 GO:0005515
Amo11g2067 301 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 291 IPR045182 -
Amo11g2067 301 ProSiteProfiles Trp-Asp (WD) repeats profile. 236 267 IPR001680 GO:0005515
Amo11g2067 301 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 1 291 - -
Amo11g2067 301 Gene3D - 128 296 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2067 Amo-Chr11 112443983 112444933 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2067 - - ahf:112722395 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2067 11 112443983 112444933 Amo11g2067 11 112443983 112444933 ECH
Amo01g2626 01 94348514 94349464 Amo11g2067 11 112443983 112444933 hybridization