Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2626 CCCAGCTTGGCTTCAGTACCCTCTCTTAACAAGAACTATCATTATTCTTGTTCTAATTATTCAACCGCCTCATACAACTGCATCGCAACCCTAAAAGGACACAACTACTACACATCCTCCTTAACCCTCTCCGCTAAATTCCTCTACAGTGGCTCCTCCGACAGAGAAATTAGGTCATGGTCCAAACAATCATTATTAACTACCACTAATAATATAGTCCTTGCTGGGAAAGGTGCAGTCAAGTCTCTAGTTGTTCACTCAGACAAGCTCTTTAGTGCTCACCAAGATAACAAAATTAGGCAGAAGTACACGCGTTTGGCCACGCTTCCAACGCTCAGCGACCGCGTCTCCAAGATATTACTCCCCAAAAACCACGTTAGAATCCGGAGGCACAAAAAGTCCACGTGGGTTCACCACGTGGATGCAGTGTCTTGTCTTGCCCTATCCCATGACGGAGCCTTGTTATACTCTGCCTCGTGGGACAGGACGATCAAGATTTGGCGAACCAGAGACTTTGCGTGTTTGGAATCAGTGATAAATGCACACGATGATGCCATCAACGCAGTTGCAGTTTCCAACGATGGACGCGTCTACACAGGATCGGCGGACAAAAGAATCAAGGTTTGGAAGAAGAAGAAAGGCGGCGGCCAAGGAGTAGTGGGAGAGAAAAGCAAAAGCAAAAACAAACACTACCTTGTGGACACGTTGGAGAAACACAAGTCTGGGATCAACGCTTTGGCGCTTAACGGCGACGGTTCGTTACTATATTCCGGGGCATGTGATAGATCAATACTGTTATGGGCGAAGAAGGAAGAAGACAAAGAAGAGAAGGTGGTGATGGAAAAATGGTGGTGGTGGGTGCGCTTAGGGGGCATGGTAGGTCTATACTTTGCTTGGTGGTGGTGA 906 0.4724 PSLASVPSLNKNYHYSCSNYSTASYNCIATLKGHNYYTSSLTLSAKFLYSGSSDREIRSWSKQSLLTTTNNIVLAGKGAVKSLVVHSDKLFSAHQDNKIRQKYTRLATLPTLSDRVSKILLPKNHVRIRRHKKSTWVHHVDAVSCLALSHDGALLYSASWDRTIKIWRTRDFACLESVINAHDDAINAVAVSNDGRVYTGSADKRIKVWKKKKGGGQGVVGEKSKSKNKHYLVDTLEKHKSGINALALNGDGSLLYSGACDRSILLWAKKEEDKEEKVVMEKWWWWVRLGGMVGLYFAWWW* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2626 301 ProSiteProfiles Trp-Asp (WD) repeats profile. 136 177 IPR001680 GO:0005515
Amo01g2626 301 Pfam WD domain, G-beta repeat 178 210 IPR001680 GO:0005515
Amo01g2626 301 Pfam WD domain, G-beta repeat 136 167 IPR001680 GO:0005515
Amo01g2626 301 Pfam WD domain, G-beta repeat 26 61 IPR001680 GO:0005515
Amo01g2626 301 Pfam WD domain, G-beta repeat 233 267 IPR001680 GO:0005515
Amo01g2626 301 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 274 IPR045182 -
Amo01g2626 301 SUPERFAMILY WD40 repeat-like 9 270 IPR036322 GO:0005515
Amo01g2626 301 SMART WD40_4 172 210 IPR001680 GO:0005515
Amo01g2626 301 SMART WD40_4 129 168 IPR001680 GO:0005515
Amo01g2626 301 SMART WD40_4 24 61 IPR001680 GO:0005515
Amo01g2626 301 SMART WD40_4 229 268 IPR001680 GO:0005515
Amo01g2626 301 ProSiteProfiles Trp-Asp (WD) repeats profile. 31 61 IPR001680 GO:0005515
Amo01g2626 301 Gene3D - 111 282 IPR015943 GO:0005515
Amo01g2626 301 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 236 267 - -
Amo01g2626 301 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 1 274 - -
Amo01g2626 301 PRINTS G protein beta WD-40 repeat signature 197 211 IPR020472 -
Amo01g2626 301 PRINTS G protein beta WD-40 repeat signature 155 169 IPR020472 -
Amo01g2626 301 PRINTS G protein beta WD-40 repeat signature 48 62 IPR020472 -
Amo01g2626 301 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 136 167 - -
Amo01g2626 301 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 210 IPR001680 GO:0005515
Amo01g2626 301 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 179 210 - -
Amo01g2626 301 Gene3D - 13 110 IPR015943 GO:0005515
Amo01g2626 301 ProSiteProfiles Trp-Asp (WD) repeats profile. 236 267 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2626 Amo-Chr1 94348514 94349464 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2626 - - adu:107472498 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2626 01 94348514 94349464 Amo11g2067 11 112443983 112444933 hybridization