Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2031 ATGGCTTCAACTGCTTCTAGGTTCATCAAGTGTGTCACAGTTGGTGATGGAGCTGTAGGGAAAACCTGCATGCTCATTTGCTACACAAGCAACAAATTCCCCACTGACTATATTCCCACAGTGTTTGATAATTTCAGTGCAAATGTGGTAGTTGAAGGCACAACTGTCAATTTAGGCCTTTGGGACACTGCTGGGCAAGAGGACTACAATAGATTGAGGCCTCTGAGCTACAGAGGCGCAGATGTATTTGTATTGGCTTTCTCTCTTGTTAGTGGCGCGAGCTATGAGAATGTCTTGAAGAAGTGGATCCCGGAGCTGCAGCATTTTGCCCCTGGTGTTCCAGTGGTACTAGTTGGCACCAAATTAGATCTTCGCGAAGACAAGCACTATCTAGCCGATCATCCCAGTCTGGTGCCTGTGACTCGTGAGCAGGGGGAGGAACTACGGAAACGAATAGGAGCTAGCTATTATATTGAGTGCAGCTCAAAAACTCAGCAGAATGTGAAGGCGGTTTTCGATGCGGCAATCAAGGTGGTGATCAAGCCTCCACAGAAGCAACAAGAGAAGAAGAAGAAACCGCGTCCCGGGTGTCTATTGTAA 600 0.475 MASTASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSGASYENVLKKWIPELQHFAPGVPVVLVGTKLDLREDKHYLADHPSLVPVTREQGEELRKRIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQQEKKKKPRPGCLL* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2031 199 Gene3D - 2 198 IPR027417 -
Amo11g2031 199 PANTHER GTPASE, PUTATIVE-RELATED 1 199 - -
Amo11g2031 199 ProSiteProfiles small GTPase Rho family profile. 2 179 - -
Amo11g2031 199 PANTHER RHO FAMILY GTPASE 1 199 IPR003578 GO:0005525|GO:0007264
Amo11g2031 199 SMART rab_sub_5 9 182 - -
Amo11g2031 199 Pfam Ras family 10 179 IPR001806 GO:0003924|GO:0005525
Amo11g2031 199 TIGRFAM small_GTP: small GTP-binding protein domain 9 173 IPR005225 GO:0005525
Amo11g2031 199 CDD Rop_like 8 180 - -
Amo11g2031 199 ProSiteProfiles small GTPase Ras family profile. 4 199 IPR001806 GO:0003924|GO:0005525
Amo11g2031 199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 179 IPR027417 -
Amo11g2031 199 SMART ras_sub_4 6 182 - -
Amo11g2031 199 ProSiteProfiles small GTPase Rab1 family profile. 4 199 - -
Amo11g2031 199 PRINTS Transforming protein P21 ras signature 9 30 - -
Amo11g2031 199 PRINTS Transforming protein P21 ras signature 49 71 - -
Amo11g2031 199 PRINTS Transforming protein P21 ras signature 111 124 - -
Amo11g2031 199 PRINTS Transforming protein P21 ras signature 157 179 - -
Amo11g2031 199 PRINTS Transforming protein P21 ras signature 32 48 - -
Amo11g2031 199 SMART rho_sub_3 11 182 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2031 Amo-Chr11 110379903 110382816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g2031 9 194 EF-hand Containing Proteins AT5G27540 23.810 5.30e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2031 K04392 - pop:7475516 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2031 11 110379903 110382816 Amo11g2031 11 110379903 110382816 ECH
Amo01g2578 01 90942544 90945159 Amo11g2031 11 110379903 110382816 hybridization