Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2578 ATGGCTTCAACTGCTTCTAGGTTCATCAAGTGTGTCACAGTTGGTGATGGAGCTGATTATATTCCCACAGTGTTTGATAATTTCAGTGCAAATGTGGTAGTTGAAGGCACAACTGTCAATTTAGGCCTTTGGGACACTGCTGGGCAAGAGGACTACAATAGATTGAGGCCTCTGAGCTACAGAGGCGCAGATGTATTTGTATTGGCTTTCTCTCTTGTTAGTGGCGCGAGCTATGAGAATGTCTTGAAGAAGTGGATCCCGGAGCTGCAGCATTTTGCCCCTGGTGTTCCAGTGGTACTAGTTGGCACCAAATTAGATCTTCGCGAAGACAAGCACTATCTAGCGGATCATCCCAGTCTGGTGCCTGTGACTCGTGAGCAGGGGGAGGAACTACGGAAACGAATAGGAGCTAGCTATTATATTGAGTGCAGCTCAAAAACTCAGCAGAATGTGAAGGCGGTTTTCGATGCGGCAATCAAGGTGGTGATCAAGCCTCCACAGAAGCAACAAGAGAAGAAGAAGAAACCGCGTCCCGGGTGTCTATTAAATATCTTCTGTGGAAGGAATATTGTTGGTCTTAAATGA 585 0.465 MASTASRFIKCVTVGDGADYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSGASYENVLKKWIPELQHFAPGVPVVLVGTKLDLREDKHYLADHPSLVPVTREQGEELRKRIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQQEKKKKPRPGCLLNIFCGRNIVGLK* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2578 194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 162 IPR027417 -
Amo01g2578 194 Gene3D - 2 182 IPR027417 -
Amo01g2578 194 SMART ras_sub_4 6 165 - -
Amo01g2578 194 ProSiteProfiles small GTPase Rho family profile. 1 162 - -
Amo01g2578 194 ProSiteProfiles small GTPase Rab1 family profile. 1 194 - -
Amo01g2578 194 PANTHER RHO FAMILY GTPASE 19 187 IPR003578 GO:0005525|GO:0007264
Amo01g2578 194 PANTHER GTPASE, PUTATIVE-RELATED 19 187 - -
Amo01g2578 194 Pfam Ras family 19 162 IPR001806 GO:0003924|GO:0005525
Amo01g2578 194 CDD Rop_like 8 163 - -
Amo01g2578 194 TIGRFAM small_GTP: small GTP-binding protein domain 20 156 IPR005225 GO:0005525
Amo01g2578 194 PRINTS Transforming protein P21 ras signature 94 107 - -
Amo01g2578 194 PRINTS Transforming protein P21 ras signature 140 162 - -
Amo01g2578 194 PRINTS Transforming protein P21 ras signature 15 31 - -
Amo01g2578 194 PRINTS Transforming protein P21 ras signature 32 54 - -
Amo01g2578 194 SMART rho_sub_3 11 165 IPR001806 GO:0003924|GO:0005525
Amo01g2578 194 ProSiteProfiles small GTPase Ras family profile. 1 182 IPR001806 GO:0003924|GO:0005525
Amo01g2578 194 SMART rab_sub_5 9 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2578 Amo-Chr1 90942544 90945159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2578 6 177 EF-hand Containing Proteins AT3G63150 28.977 3.53e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2578 K04392 - pvy:116135646 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2578 01 90942544 90945159 Amo11g2031 11 110379903 110382816 hybridization