Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g1343 ATGTTTCCAACAACCTCAAAAGCTACGTTTTTTATTTTCATGATTCTAATGCTGAATGCTATGCCACCAATAATCTTAGCATGTGGTCCTTGCACGCAGCCGCATCCATCACCACCTCACCACCACTACCGCCCAAAACCCCCGCCACATCACGGCGGAGGAGGAAAACACCCCTCGAAACCGCCGTCATATCCATCACCACCAGTCATCATCATCCCGCCTCCAGTGCAACCCCCTCCAGTAATCATATACCCGCCGCCGCCGGCTCGAGCGACCTGTCCGATCGACGCGCTGAAGCTAGGGCTGTGCTTGGACGTTGCCGGAGGGATTGTGCATGTGGGAATAGGGAACCCGGTGGAGAATATTTGTTGTCCAGTGATTCAAGGGTTGCTTGATCTTGAAGCGGCGATTTGTCTTTGCACCGTTATTAGGATTAAGCTTCTTAATCTCAACATATTCATACCTGTTGCTCTTCAGGTTCTTGCAACTTGTGGCATGACTCCTCCTCCTGGTTTTGTTTGTCCACCTCTAAAATAG 537 0.5047 MFPTTSKATFFIFMILMLNAMPPIILACGPCTQPHPSPPHHHYRPKPPPHHGGGGKHPSKPPSYPSPPVIIIPPPVQPPPVIIYPPPPARATCPIDALKLGLCLDVAGGIVHVGIGNPVENICCPVIQGLLDLEAAICLCTVIRIKLLNLNIFIPVALQVLATCGMTPPPGFVCPPLK* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g1343 178 CDD HPS_like 91 174 IPR027923 -
Amo11g1343 178 Gene3D - 89 176 IPR036312 -
Amo11g1343 178 MobiDBLite consensus disorder prediction 39 53 - -
Amo11g1343 178 PANTHER - 5 176 - -
Amo11g1343 178 MobiDBLite consensus disorder prediction 37 62 - -
Amo11g1343 178 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 5 176 - -
Amo11g1343 178 SMART aai_6 93 174 IPR016140 -
Amo11g1343 178 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 95 176 IPR036312 -
Amo11g1343 178 Pfam Hydrophobic seed protein 92 175 IPR027923 -
Amo11g1343 178 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g1343 Amo-Chr11 46966412 46967388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g1343 91 176 Acyl Lipid Metabolism Gene Families AT4G22490 33.721 1.94e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g1343 - - adu:107486606 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g1343 11 46966412 46967388 Amo11g1343 11 46966412 46967388 ECH
Amo01g1768 01 42534288 42535250 Amo11g1343 11 46966412 46967388 hybridization