Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1768 ATGTTTCCAACAACCTCAAAAGCTACGTTCTTGATTTTCATGATTCTAATGCTGAATGCTATGCCACCAATAATCTTAGCATGTGGTCCTTGCACGCAGCCGCATCCATCACCGCCTCACCACCACTACCGCCCAAAACCCCCGCCGCATCACGGGGGAGGAGGAAAACACCCCCCGAAACCGCCGTCATATCCATCACCACCAGTCATCATCATCCCGCCTCCAGTGCAACCCCCTCCAGTAATCATATACCCGCCGCCGCCGGCTCGAGCGACCTGTCCGATCGACGCGCTGAAGCTAGGGCTGTGCTTGGACGTTGCCGGAGGGATTGTGCATGTGGGAATAGGGAACCCGGTGGAGAATATTTGTTGTCCAGTGATTCAAGGGTTGCTTGATCTTGAAGCGGCGATTTGTCTTTGCACCGTTATTAGGATTAAGCTTCTTAATCTCAACATATTCATCCCTGTTGCTCTTCAGGTTCTTGCAACTTGTGGCATGACTCCTCCTCCTGGTTTTGTTTGTCCACCTCTAAAATAG 537 0.5158 MFPTTSKATFLIFMILMLNAMPPIILACGPCTQPHPSPPHHHYRPKPPPHHGGGGKHPPKPPSYPSPPVIIIPPPVQPPPVIIYPPPPARATCPIDALKLGLCLDVAGGIVHVGIGNPVENICCPVIQGLLDLEAAICLCTVIRIKLLNLNIFIPVALQVLATCGMTPPPGFVCPPLK* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1768 178 CDD HPS_like 91 174 IPR027923 -
Amo01g1768 178 MobiDBLite consensus disorder prediction 37 61 - -
Amo01g1768 178 MobiDBLite consensus disorder prediction 39 53 - -
Amo01g1768 178 Pfam Hydrophobic seed protein 92 175 IPR027923 -
Amo01g1768 178 PANTHER - 5 176 - -
Amo01g1768 178 Gene3D - 89 176 IPR036312 -
Amo01g1768 178 SMART aai_6 93 174 IPR016140 -
Amo01g1768 178 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 5 176 - -
Amo01g1768 178 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 95 176 IPR036312 -
Amo01g1768 178 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1768 Amo-Chr1 42534288 42535250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1768 91 176 Acyl Lipid Metabolism Gene Families AT4G22490 33.721 2.20e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1768 - - adu:107486606 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1768 01 42534288 42535250 Amo11g1343 11 46966412 46967388 hybridization