Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0345 GTCTCAAGTGTACGCTTTCCACTGCTCTCTGCAGATCTCATTCTCTTTCTTCGGAACCTTCCAGAAATGCAGCCTCTCCGGCCGGCGAATCTTGCGGCCCTAGCGGCAGCGCTACTCCTCTTAGCCGCCGCCACAACCCATGCACACAACATTACCCGCATTTTGGAGAAGCACCCCGACTTCTCCACCTTTAACAAGTACCTAACACTAACTCACCTTGCGCCGGAGATCAACCGGCGAATCACCATAACCGTGTGCGCCATCGACAACACCGCCATGAACGAGCTGCTCTCGAAGCACCCTTCCATCTACACTCTGAAGAACATCCTGTCCCTCCACGTCCTCCTCGACTACTTCGGCGCCAAGAAGCTCCACCAGATCACCAACGGCACCGCCCTCGCCGCCACCATGTTTCAGGCCACCGGAACCGCCCCCGGCTCCACGGGATTCGTCAACATCACCGACCTCCGCGGCGGAAAGGTGGGCTTCGGCGCCGAGAATAACGGCGGCGCCCTGTCCGCATTCTTCGTGAAATCGTTGGAGGAAATCCCTTACAACATATCGATAATACAGATCAGCAAGCCACTCCCCTCGGCTGCAGCAGAAGCCCCTACACCCGCACCCAGCAAGCAAAATCTCACTTCCATAATGTCCCGCCATGGCTGCAAGGTCTTCGCCGACACCCTTTCTGCCTCCCCCGACGCTATGTCCACCTTTTCTGACAATGTGGATGGCGGACTCACCGTCTTCTGCCCCATGGATGACGCCTTTAAGGCATTCCTACCAAAGTATAAGAACCTAACTGCAGCTGGGAAGGCGTCGTTGCTGGAGTACCATGCTACGCCTGTTTATGAGAGCATGGCTATGTTGAAGTCAAACAATGGTTTGATGAACACGCTTGCTACCGATGGAGCCAGCAAGTTCGACTTCACCGTGCAGAATGACGGTGATCAAGTCACGCTCAAGACCAAGATTGTTACTGCCAAGATCACTGGCACGCTCATTGACGAAGACCCGCTCGCGATCTACACCATTGATAAGGTTCTGCTTCCCAGGGAGCTTTTCAAGGCCCTGGCTCCGTCTCCTTCGCCCTCGCCCGCTCCGGAACCAGCCGCCGCCGACGCTCCTGCATCCCCGAAGAAAGGGGGAAAGAAGAAGAAGCAGAAGGCAGCCGACGCGCCGGCAGATGAGGAATCAGCGCCTGCGGATTCGCCCAGTGATGCCGCCGATGAGAGCGCTGACGACGGTAACGGCGCTGTTAGGTTTGACGGCGTCAGGTACGGTAACGTCATCTTCGTGGTTATGGCTTTGTGCTTTGGGTTTTCATTGCTGTAA 1335 0.5633 VSSVRFPLLSADLILFLRNLPEMQPLRPANLAALAAALLLLAAATTHAHNITRILEKHPDFSTFNKYLTLTHLAPEINRRITITVCAIDNTAMNELLSKHPSIYTLKNILSLHVLLDYFGAKKLHQITNGTALAATMFQATGTAPGSTGFVNITDLRGGKVGFGAENNGGALSAFFVKSLEEIPYNISIIQISKPLPSAAAEAPTPAPSKQNLTSIMSRHGCKVFADTLSASPDAMSTFSDNVDGGLTVFCPMDDAFKAFLPKYKNLTAAGKASLLEYHATPVYESMAMLKSNNGLMNTLATDGASKFDFTVQNDGDQVTLKTKIVTAKITGTLIDEDPLAIYTIDKVLLPRELFKALAPSPSPSPAPEPAAADAPASPKKGGKKKKQKAADAPADEESAPADSPSDAADESADDGNGAVRFDGVRYGNVIFVVMALCFGFSLL* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0345 444 Pfam Fasciclin domain 59 129 IPR000782 -
Amo11g0345 444 Pfam Fasciclin domain 222 351 IPR000782 -
Amo11g0345 444 Gene3D FAS1 domain 190 352 IPR036378 -
Amo11g0345 444 MobiDBLite consensus disorder prediction 359 418 - -
Amo11g0345 444 SUPERFAMILY FAS1 domain 206 352 IPR036378 -
Amo11g0345 444 Gene3D FAS1 domain 46 188 IPR036378 -
Amo11g0345 444 ProSiteProfiles FAS1/BIgH3 domain profile. 209 349 IPR000782 -
Amo11g0345 444 SMART fasc_3 84 199 IPR000782 -
Amo11g0345 444 SMART fasc_3 248 352 IPR000782 -
Amo11g0345 444 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 32 429 IPR033254 -
Amo11g0345 444 SUPERFAMILY FAS1 domain 54 196 IPR036378 -
Amo11g0345 444 ProSiteProfiles FAS1/BIgH3 domain profile. 48 196 IPR000782 -
Amo11g0345 444 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1 32 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0345 Amo-Chr11 5442462 5443916 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0345 - - lang:109350304 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0345 11 5442462 5443916 Amo11g0345 11 5442462 5443916 ECH
Amo11g0345 11 5442462 5443916 Amo01g0317 01 5095917 5097387 hybridization