Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0317 GCAGCCTCAAGTGTACGCTTTCCACTGCTCTCTGCAGATCTCATTCTCTTTCTTCGGAACCTTCCAGAAATGCAGCCTCTCCGGCCGGCGAATCTTGCGCCCCTAGCGGCAGCGCTACTCCTCTTAGCCGCCGCCACAACCCATGCACACAACATTACCCGCATTTTGGAGAAGCACCCCGACTTCTCCACCTTCAACAAGTACCTAACACTAACTCACCTTGCGCCGGAGATCAACCGGCGAATCACCATAACCGTGTGCGCCATCGACAACAGCGCCATGAACGAGCTGCTGTCGAAGCACCCTTCCATCTACACTCTGAAGAACATCCTGTCCCTCCACGTCCTCCTCGACTACTTCGGCGCCAAGAAGCTCCACCAGATCACCAACGGCACCGCCCTCGCCGCCACCATGTTTCAGGCCACCGGAACCGCCCCCGGCTCCACGGGATTCGTCAACATCACCGACCTCCGCGGCGGAAAGGTGGGCTTCGGCGCCGAGAATAACGGCGGCGCCCTGTCCGCATTCTTCGTGAAATCGTTGGAGGAAATCCCTTACAACATATCCATAATACAGATCAGCAAGCCACTCCCCTCGGCTGCAGCAGAAGCCCCTACACCCGCACCCAGCAAGCAAAATCTCACTTCGATAATGTCCCGCCATGGCTGCAAGGTCTTTGCCGACACCCTCTCTGCCTCCCCCGACGCTATGTCCACCTTTTCTGACAATGTGGATGGCGGACTCACCGTCTTCTGCCCCATGGATGACGCCTTTAAGGCATTCCTACCCAAGTATAAGAACCTAACTGCWGCTGGGAAGGCGTCGTTGCTGGAGTACCATGCTACGCCTGTTTATGAGAGCATGGCTATGTTGAAGTCAAACAATGGTTTGATGAACACGCTTGCTACCGATGGAGCCAGCAAGTTRGACTTCACCGTGCAGAATGACGGTGATCAAGTCACGCTCAAGACCAAGATTGTTACTGCCAAGATCACTGGCACGCTCATTGACGAGGACCCGCTCGCGATCTACACCATTGATAAGGTTCTGCTTCCCAGGGAGCTTTTCAAGGCCCTGGCTCCGTCTCCTTCGCCCTCGCCCGCACCGGAGCCAGCCGCCGCCGACGCTCCTGCATCCCCGAAGAAAGGGGGAAAGAAGAAGAAGCAGAAGGCAGCCGACGCYCCGGCAGATGAGGAATCAGCGCCTGCGGATTCGCCCAGTGATGCCGCCGATGAGAGCGCTGACGACGGTAACGGCGCTGTTAGGTTTGACGGCGTCAGGTACGGTAACGTCATCTTCGTGGTTATGGCTTTGTGCTTTGGGTTTTCCTTGCTGTAA 1338 0.5665 AASSVRFPLLSADLILFLRNLPEMQPLRPANLAPLAAALLLLAAATTHAHNITRILEKHPDFSTFNKYLTLTHLAPEINRRITITVCAIDNSAMNELLSKHPSIYTLKNILSLHVLLDYFGAKKLHQITNGTALAATMFQATGTAPGSTGFVNITDLRGGKVGFGAENNGGALSAFFVKSLEEIPYNISIIQISKPLPSAAAEAPTPAPSKQNLTSIMSRHGCKVFADTLSASPDAMSTFSDNVDGGLTVFCPMDDAFKAFLPKYKNLTAAGKASLLEYHATPVYESMAMLKSNNGLMNTLATDGASKLDFTVQNDGDQVTLKTKIVTAKITGTLIDEDPLAIYTIDKVLLPRELFKALAPSPSPSPAPEPAAADAPASPKKGGKKKKQKAADAPADEESAPADSPSDAADESADDGNGAVRFDGVRYGNVIFVVMALCFGFSLL* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0317 445 SUPERFAMILY FAS1 domain 55 197 IPR036378 -
Amo01g0317 445 Pfam Fasciclin domain 223 352 IPR000782 -
Amo01g0317 445 Pfam Fasciclin domain 60 130 IPR000782 -
Amo01g0317 445 ProSiteProfiles FAS1/BIgH3 domain profile. 49 197 IPR000782 -
Amo01g0317 445 Gene3D FAS1 domain 191 353 IPR036378 -
Amo01g0317 445 ProSiteProfiles FAS1/BIgH3 domain profile. 210 350 IPR000782 -
Amo01g0317 445 SMART fasc_3 85 200 IPR000782 -
Amo01g0317 445 SMART fasc_3 249 353 IPR000782 -
Amo01g0317 445 MobiDBLite consensus disorder prediction 360 419 - -
Amo01g0317 445 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 35 430 IPR033254 -
Amo01g0317 445 SUPERFAMILY FAS1 domain 207 353 IPR036378 -
Amo01g0317 445 Gene3D FAS1 domain 48 180 IPR036378 -
Amo01g0317 445 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1 35 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0317 Amo-Chr1 5095917 5097387 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0317 - - lang:109350304 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0345 11 5442462 5443916 Amo01g0317 01 5095917 5097387 hybridization