Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0333 ATGAACCCAACACCAAGGAAACTCGCACTCTCACTCTCACGTGCGCTCTCACGTGCCCTAACTACCGCCACCGCCGCAGCCTCGCAATCTGGATCGGCTTTCCCTCTCAAGACGGTTACCACCAAAAACTTCGAAGCTTCTCTTTCGGAGCTCCGGGACCATGTCCGAACCTCCGATTTTGTGGCCATCGACCTTGAGATGACCGGCGTAACCAGTGCGCCCTGGCGGGAGTCCTTCGAGTTCGACCGCTCCGACGTCCGGTACCTGAAGGTCAGGGACTCCGCCCACAAGTTTGCCGTCATTCAGTTCGGCGTCTGCCCCTTCCGTTGGGACTCTTCCAACCACTACTTCGTCGCTTATCCGTACAATTTCTATGTTTTTCCACATCAGGAGCTTGAGGATCTGGCTCCATGTTATGAATTTCTCTGCCAGACTACTTCAATGGATTTCTTGGCTAAATACCAGTTTGATTTCAATGCATGCATACGTGAAGGAATATCTTATTTATCTAGAGCGCAAGAAAGGGAAGCAGTAAGGAGATTGAATTCTAGATACGAAAGTGAGCATTCAAACATTTGTAAATTAAAAGACGTTAAAGGCATACAATTGATCAGCATGGCAGACATATTGTTCTCTGAACGAATGAAAAACAAATTCAGTAAATGGCGTGATGGGTTATTACAGGAGCAAAGTCGAGAAGAACAAATTATAGGAACTTCAAAAGACTCAAAACAGCTATTTGAAGTGATTTTCTTTAAGATGCATCCTGCTATTAGACTTAGTGGATTTACATCTCGGCAGCTAAAATTGATTCAGTTGGTCATCAGAAAACACTTTCAAGATTTGTCATATGTATGTGTGAATAGCGAAGATTCTGGTTCACAACATATGGTTGTATATACAGACTCAAGGGATGAACTAAACTTACTTCTGAAGGAGGTAAAAGATGGAAATCGCAAGGCAGAAGAGAAGAAGATTCAAAATGCTGTGGGATTTCGCCATGTTATTGATCTCCTTTCTGCAGAAAAGAAGTTGATTGTTGGTCATAATTGTTTTCTGGATATTGCTCATGTCTACAACAAATTTATAGGTCCCCTTCCAGGGACTCCTGAAGAGTTTGTCACCTCTATTAACAAGTATTTTCCGCACATTGTTGACACTAAAATACTCTTCAACAATAATCATGTGCTCCAAGAAAAGATGAAAAGGTCAAGAAAATCACTGGCCTCTGCATTTTCCTTGTTTTGTCCACAAATTGCAGTAGGTTCCAACAGCAGTGATCTTGATTCACCCTTACATGTGAAAGTGAATGTTGAAGTTAATGATTTGAGATCATCGAGCTGGAACCCTGGAGCCAAGCATGAGGCCGGATATGATGCTTTTATGACTGGTTGCATCTTTGCTCAAATATGCAGTGATTTAGGAGTTGATTATAAACACCATGAATCTTCTCCACAACAACTAGCCCTCAATGAGAAACTACAAAAGTATGTTAACCATCTATATCTTAGTTGGATACATGGGGACATTATTGATCTGAATACCGGTGATAAGGTTGCAGAATCTACACCAAGCAATAACCTCAAGAGGCAATATCCAAAGATTTTGTTTGAAAATATTGTTATTATTTGGGGTTTTCCTTCTCAGCTGAAGGCAAATGATCTAAGAGTGTGCATATCTAAAGTTTTTGGTCCAGCTTCTGTGGTTTCTGTCTACCACTTGGATGCGACTGCAGTATTTGTGCAGTTTAGTAAGACAGAACTAGTTTACGACTTCCTTTTGTTGAAGGACACCTTAGAAAGAAGTGATGGCGCAATCTTGGTTTTGCACCCTCTTGCAAAGATTTTGGAAGGGGGCAATACATGTGCCGCTGATTATGATACTTACAAAGAAATCTGTGGTTCACCCATTTCCGAAGCTTTGTTTGCCGTGCAGGCAAAGGCGGTTGGCATAAAGTGGAAGACCAAATTGGTAGAAAGCCATGTCACAGTGCAAACTGAAGACCACGAAAGTCCAGGCGCAGAAGGTTCTGTAAATTCGGTTATGAAATTTGTAAAGTCCAAACCAAACATAATTGAGCAGTTAAGAAATGCTCCATCTCATAGGAAAGTCTCATCTTTTGAGACCGAAGATTCTTGCTGTGCAGTAGAAATGAATGCTTGA 2163 0.4179 MNPTPRKLALSLSRALSRALTTATAAASQSGSAFPLKTVTTKNFEASLSELRDHVRTSDFVAIDLEMTGVTSAPWRESFEFDRSDVRYLKVRDSAHKFAVIQFGVCPFRWDSSNHYFVAYPYNFYVFPHQELEDLAPCYEFLCQTTSMDFLAKYQFDFNACIREGISYLSRAQEREAVRRLNSRYESEHSNICKLKDVKGIQLISMADILFSERMKNKFSKWRDGLLQEQSREEQIIGTSKDSKQLFEVIFFKMHPAIRLSGFTSRQLKLIQLVIRKHFQDLSYVCVNSEDSGSQHMVVYTDSRDELNLLLKEVKDGNRKAEEKKIQNAVGFRHVIDLLSAEKKLIVGHNCFLDIAHVYNKFIGPLPGTPEEFVTSINKYFPHIVDTKILFNNNHVLQEKMKRSRKSLASAFSLFCPQIAVGSNSSDLDSPLHVKVNVEVNDLRSSSWNPGAKHEAGYDAFMTGCIFAQICSDLGVDYKHHESSPQQLALNEKLQKYVNHLYLSWIHGDIIDLNTGDKVAESTPSNNLKRQYPKILFENIVIIWGFPSQLKANDLRVCISKVFGPASVVSVYHLDATAVFVQFSKTELVYDFLLLKDTLERSDGAILVLHPLAKILEGGNTCAADYDTYKEICGSPISEALFAVQAKAVGIKWKTKLVESHVTVQTEDHESPGAEGSVNSVMKFVKSKPNIIEQLRNAPSHRKVSSFETEDSCCAVEMNA* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0333 720 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 35 657 - -
Amo11g0333 720 PANTHER POLY(A)-SPECIFIC RIBONUCLEASE PNLDC1 35 657 - -
Amo11g0333 720 SUPERFAMILY Ribonuclease H-like 29 477 IPR012337 -
Amo11g0333 720 Pfam CAF1 family ribonuclease 39 467 IPR006941 -
Amo11g0333 720 Gene3D - 275 518 IPR036397 GO:0003676
Amo11g0333 720 Gene3D - 38 251 IPR036397 GO:0003676
Amo11g0333 720 Coils Coil 304 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0333 Amo-Chr11 5224697 5230506 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0333 K01148 - gmx:100784997 1039.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0333 11 5224697 5230506 Amo11g0333 11 5224697 5230506 ECH
Amo11g0333 11 5224697 5230506 Amo01g0330 01 5236351 5241823 hybridization