Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0330 ATGAACCCAACACCAAGGAAACTCGCACTCTCACTCTCACGTGCGCTCTCACGTGCCCTAACTACCGCCACCGCCGCAGCCTCGCAATCTGGATCGGCTTTCCCTCTCAAGACGGTTACCACCAAAAACTTCGAAGCTTCTCTTTCGGAGCTCCGGGACCATGTCCGAACCTCCGATTTTGTGGCCATCGACCTTGAGATGACCGGCGTAACCAGTGCGCCCTGGCGGGAGTCCTTCGAGTTCGACCGCTCCGACGTCCGGTACCTGAAGGTCAGGGACTCCGCCCACAAGTTTGCCGTCATTCAGTTCGGCGTCTGCCCCTTCCGTTGGGACTCTTCCAACCACTACTTCGTCGCTTATCCGTACAATTTCTATGTTTTTCCACATCAGGAGCTTGAGGATCTGGCTCCATGTTATGAATTTCTCTGCCAGACTACTTCAATGGATTTCTTGGCTAAATACCAGTTTGATTTCAATGCATGCATACGTGAAGGAATATCTTATTTATCTAGAGCGCAAGAAAGGGAAGCAGTAAGGAGATTGAATTCTAGATACGAAAGTGAGCATTCAAACATTTGTAAATTAAAAGACGTTAAAGGCATACAATTGATCAGCATGGCAGACATATTGTTCTCTGAACGAATGAAAAACAAATTCAGTAAATGGCGTGATGGGTTATTACAGGAGCAAAGTCGAGAAGAACAAATTATAGGAACTTCAAAAGACTCAAAACAGCTATTTGAAGTGATTTTCTTTAAGATGCATCCTGCTATTAGACTTAGTGGATTTACATCTCGGCAGCTAAAATTGATTCAGTTGGTCATCAGAAAACACTTTCAAGATTTGTCATATGTATGTGTGAATAGCGAAGATTCTGGTTCACAACATATGGTTGTATATACAGACTCAAGGGATGAACTAAACTTACTTCTGAAGGAGGTAAAAGATGGAAATCGCAAGGCAGAAGAGAAGAAGATTCAAAATGCTGTGGGATTTCGCCATGTTATTGATCTCCTTTCTGCAGAAAAGAAGTTGATTGTTGGTCATAATTGTTTTCTGGATATTGCTCATGTCTACAACAAATTTATAGGTCCCCTTCCAGGGACTCCTGAAGAGTTTGTCACCTCTATTAACAAGTATTTTCCGCACATTGTTGACACTAAAATACTCTTCAACAATAATCATGTGCTCCAAGAAAAGATGAAAAGGTCAAGAAAATCACTGGCCTCTGCATTTTCCTTGTTTTGTCCACAAATTGCAGTAGGTTCCAACAGCAGTGATCTTGATTCACCCTTACATGTGAAAGTGAATGTTGAAGTTAATGATTTGAGCAGATCACTGACTCACACTATGAAATGGATTTTATGCCCAACTCCTGGTTTGCATTTGATTGGCAGTGGAGCTTATGTGTTGTCACCTAAAAAAGAAGAAAGTAAAGACAATGATATTCATGCAATTTTCAGAATTTCATTTAACACGGAAGAACACTTAAAAACATTGTTGCTTTTTATATCACTTGTTGTCCAAGCTGTCTTCGTCTTTAGATGTATCTTTTTATCATCGAGCTGGAACCCTGGAGCCAAGCATGAGGCCGGATATGATGCTTTTATGACTGGTTGTATCTTTGCTCAAATATGCAGTGATTTAGGAGTTGATTATAAACACCATGAATCTTCTCCGCAACAATTAGCCCTTAATGAGAAACTACAAAAGTATGTTAACCATCTATATCTTAGTTGGATACATGGGGACATTATTGATCTGAATACCGGTGATAAGGTTGCAGAATCTACACCAAGCAATAACCTCAAGAGGCAATATCCAAAGATTTTGTTTGAAAATATTGTTATTATTTGGGGTTTTCCTTCTCAGCTGAAGGCAAATGATCTAAGAGTGTGCATATCTAAAGTTTTTGGTCCAGCTTCTGTGGTTTCTGTCTACCACTTGGATGCGACTGCAGTATTTGTGCAGTTTAGTAAGACAGAACTAGTTTACGACTTCCTTTTGTTGAAGGACACCTTAGAAAGAAGTGATGGCACAATCTTGGTTTTGCACCCTCTTGCAAAGATTTTGGAAGGGGGCAATACATGCGCTGCTGATTATGATACTTACAAAGAAATCTGTGGTTCGCCCATTTCCGAAGCTTTGTTTGCCGAGCAGGCAAAGGCGGTTGGCATAAAGTGGAAGACCAAATTGGTAGAAAGCCAGGTCACATTGCAAGCCGAAGACCACGAAAGTCCAGGCGCAGAAGGTTCTGTAAATTCGGTTATGAAACTTGTAAAGACCAAACCAAACATAATTGAGCAGTTAAGAAATGCTCCATCTCATAGGAAAGTCTCATCTTTTGAGACCGAAGATTCTTGCTGTGCAGTAGAAATGAATGCTTGA 2388 0.4112 MNPTPRKLALSLSRALSRALTTATAAASQSGSAFPLKTVTTKNFEASLSELRDHVRTSDFVAIDLEMTGVTSAPWRESFEFDRSDVRYLKVRDSAHKFAVIQFGVCPFRWDSSNHYFVAYPYNFYVFPHQELEDLAPCYEFLCQTTSMDFLAKYQFDFNACIREGISYLSRAQEREAVRRLNSRYESEHSNICKLKDVKGIQLISMADILFSERMKNKFSKWRDGLLQEQSREEQIIGTSKDSKQLFEVIFFKMHPAIRLSGFTSRQLKLIQLVIRKHFQDLSYVCVNSEDSGSQHMVVYTDSRDELNLLLKEVKDGNRKAEEKKIQNAVGFRHVIDLLSAEKKLIVGHNCFLDIAHVYNKFIGPLPGTPEEFVTSINKYFPHIVDTKILFNNNHVLQEKMKRSRKSLASAFSLFCPQIAVGSNSSDLDSPLHVKVNVEVNDLSRSLTHTMKWILCPTPGLHLIGSGAYVLSPKKEESKDNDIHAIFRISFNTEEHLKTLLLFISLVVQAVFVFRCIFLSSSWNPGAKHEAGYDAFMTGCIFAQICSDLGVDYKHHESSPQQLALNEKLQKYVNHLYLSWIHGDIIDLNTGDKVAESTPSNNLKRQYPKILFENIVIIWGFPSQLKANDLRVCISKVFGPASVVSVYHLDATAVFVQFSKTELVYDFLLLKDTLERSDGTILVLHPLAKILEGGNTCAADYDTYKEICGSPISEALFAEQAKAVGIKWKTKLVESQVTLQAEDHESPGAEGSVNSVMKLVKTKPNIIEQLRNAPSHRKVSSFETEDSCCAVEMNA* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0330 795 PANTHER POLY(A)-SPECIFIC RIBONUCLEASE PNLDC1 35 733 - -
Amo01g0330 795 SUPERFAMILY Ribonuclease H-like 37 554 IPR012337 -
Amo01g0330 795 Pfam CAF1 family ribonuclease 39 542 IPR006941 -
Amo01g0330 795 Gene3D - 38 250 IPR036397 GO:0003676
Amo01g0330 795 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 35 733 - -
Amo01g0330 795 Gene3D - 295 593 IPR036397 GO:0003676
Amo01g0330 795 Coils Coil 304 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0330 Amo-Chr1 5236351 5241823 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0330 K01148 - fve:101296084 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0333 11 5224697 5230506 Amo01g0330 01 5236351 5241823 hybridization