Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2581 TTTTACATACAATATTCCAGTGTTGAAACATATAACGAAATGTTGAGACGCCACATGAGTGACAGTGAGGTGATTAGCATGGTTGCACATTCATCTGAATTTGAGAATATTGTTGTTCGAGAAGAAGAACAGAATGAGCTAGAGATGTTGGTTCGCTCACAATGTCCATTAGAAGTTAGGGGTGGTCCTTCCAATAAACATGGAAAGATATCCATTTTGATTCAGTTGTATATATCTCGAGGGTCTATAGATTCTTTTTCTTTGGTATCTGATGCTGCATACATAAGTGCAAGCTTAGCTCGTATAATGCGGGCTTTATTTGAGATTTGTCTGCGAAGGGGCTGGTGTGAAATGTCTTTGTTTATGTTGGAATATTGCAAAGCTGTGGATCGCCAAGTTTGGCCACACCAACATCCTCTTAGACAGTTTGATAAGGACATTTCTGGAGAGATATTGCGGAAGCTCGAAGAACGTGGGGCTGACCTAGATCGCCTGTTGGAGATGGAGGAAAAAGACATTGGGGCGTTAATTCGTTATGCACCTGGAGGAAAATTGGTCAAGCAATACCTGGGGTATTTTCCATCAATTCAGTTATCAGCGACAGTCAGTCCGATAACTAGAACTGTTCTGAAGGTTGATTTGGTGATAATGCCTGTTTTCATTTGGAAAGATCGTTTTCATGGTACTGCTCAACGCTGGTGGATTTTGGTAGAGGACTCTGAGAATGATCACATTTACCACTCAGAACTCTTTACTCTGACAAAGCGGATGGCTAAAGGGGAACCTTATAAACTTTCCTTCACTGTGCCCATATTTGAACCACACCCGCCACAGTATTACATTCATGCTATTTCTGATTCTTGGCTTCAAGCAGAAGCATTCTACACTATTACTTTTCATAATTTACCATTGCCAGAGGCTAGGACTTCTCACACTGAACTCCTTGATTTAAAACCTCTTCCTGTGTCTTCCCTAGGCAATGTTGCTTATGAAGCGTTATATAGATTTTCACATTTTAATCCTATACAAACACAGATTTTTCATGTCTTGTATCACACGGACAATAATGTTCTATTAGGAGCTCCAACTGGAAGTGGTAAAACTATATCTGCTGAGCTTGCTATGCTTCATCTTTTCAACACGCAGCCTGATATGAAGGTTATTTATATAGCACCTTTGAAGGCTATTGTCAGGGAAAGAATGGGTGATTGGCAAAGGCGTCTTGTCTCTCAGCTAGGGAAAAAGATGGTTGAAATGACAGGAGACTATACACCAGATTTGATGGCCCTTTTGTCTGCAGATATCATCATATCTACCCCTGAAAAATGGGATGGTATCAGTCGTAATTGGCATACACGCAGCTATGTCACAAAGGTTGGACTCATGATATTGGATGAGATTCACTTATTGGGAGCTGATCGTGGACCCATACTTGAGGTTATTGTTTCTAGGATGAGATACATATCATCACAAACAGAGCGAGCAATAAGATTTGTTGGCCTCTCTACAGCTCTAGCAAATGCTGGTGATCTAGCTGATTGGTTAGGCGTTGAGGAGACTGGCCTCTTCAATTTCAAGCCAAGTGTGAGACCTGTACCTCTGGAGGTTCATATCCAGGGCTATCCTGGAAAGTATTATTGCCCAAGGATGAACAGTATGAATAAACCAGCGTATGCAGCAATATGCACACATTCACCTGCTAAACCTGTTCTTATATTTGTCTCTTCACGACGCCAGACAAGGCTGACTGCACTGGACCTAATTCAGTTTGCTGCCTCAGACGAGCATCCAAGGCAGTTCCTTGATATGCCAGAAGATGCACTGCAGATGGTTCTGTCCCAAGTCTCTGACCAAAACCTGAGGCATACTTTACAATTTGGTATTGGGTTACACCATGCAGGCCTGAATGACAAAGACAGATCATTGGTTGAGGAACTTTTTGCAAACAACAAGATTCAGATACTGGTTTGTACCAGCACATTGGCTTGGGGTGTGAATCTTCCAGCTCATCTAGTGATTATCAAGGGTACAGAATACTATGATGGAAAATCAAAGAGGTATGTAGATTTTCCAATCACTGATATCTTGCAAATGATGGGTCGTGCTGGAAGGCCTCAGTTTGATCAGCATGGGAAAGCAGTGATTCTTGTTCATGAACCAAAGAAGAGCTTCTATAAAAAGTTCTTGTATGAACCTTTTCCAGTTGAAAGTAGTCTGAGGGAGCACCTGCATGATCACCTCAATGCTGAAATTATTTCTGGAACCATTTGCAATAAACAAGATGCAGTGCACTACCTTACATGGACTTACTTATTCCGTAGACTGATGGTTAATCCTGCTTACTATGGATTGGAGAATGCCGACCCTGAATTTATCAGTTCATATCTGTCTAGTCTAGTACAGAGTACATTTGAGGACTTGGAAGACAGTGGATGCATAAAAATGAATGAAGACACTGTAGAATCAATGATGTTGGGTTCAATAGCATCTCAGTATTACCTAAGCTACATGACAGTATCAATGTTTGGTTCAAACATAGGTCCTGATACATCACTTGAAGTGTTTTTGCACGTCTTATCTGCTGCTTCCGAATTTGATGAACTCCCTGTGCGTCATAATGAGGAAAAATACAATGAAGGACTGTCTCAGAAAGTTAAATATCCAGTGGATAACAACCGTTTGGATGACCCCCATGTCAAAGCAAATCTTCTATTTCAGGCTCATTTCTCTCAGTTGGACTTACCAATTAGTGATTATGTCACGGACTTGAAGTCAGTATTAGATCAGAGTATACGCATAATTCAGGCCATGATTGATATATGTGCAAACAGTGGTTGGCTTTCAAGCTCACTCACTTGCATGCATCTTCTGCAAATGGTCATGCAGGGGCTGTGGTTTGAAAAGGACTCTTCTTTATGGATGCTGCCATGCATGAATGCTGATCTAATGCAATCCCTTAGCAGAAGTGGAATTTCCAGTGTACAGGAATTACTAGATATTCCCAAGGCATCCTTGCAAAATGTAACAGGAAGTTTCCCGGCTTCAAGATTGTACCAGGACCTACAGCACTTCCCTCGTGTTAAAATGAAGTTAAAGCTTCAGAAGAAGGAAACTAATGGTGAGAGCTCCGATGCATTGTACATCAGATTGGAGAAGTCGAATTCTAGACGACACTCCTCTCAAGCCTTTGTACCTCGATTTCCAAAGATAAAAGAAGAGCAGTGGTGGTTGGTTCTTGGTAATACCTCTACATCTGCTGAGTTATATGCATTGAAGCGAGTGTCTTTTTCTGATCAGTTGGTTACCTTGATGAAGCTGCCTCATACACCATCCAACCTTAAGGGTATGAAACTCATATTAGTCTCAGATTGTTACATTGGATTTGAACAAGAACACTCCATTGAAGGACTTATTGGAGGCCGGCATTAG 3429 0.4132 FYIQYSSVETYNEMLRRHMSDSEVISMVAHSSEFENIVVREEEQNELEMLVRSQCPLEVRGGPSNKHGKISILIQLYISRGSIDSFSLVSDAAYISASLARIMRALFEICLRRGWCEMSLFMLEYCKAVDRQVWPHQHPLRQFDKDISGEILRKLEERGADLDRLLEMEEKDIGALIRYAPGGKLVKQYLGYFPSIQLSATVSPITRTVLKVDLVIMPVFIWKDRFHGTAQRWWILVEDSENDHIYHSELFTLTKRMAKGEPYKLSFTVPIFEPHPPQYYIHAISDSWLQAEAFYTITFHNLPLPEARTSHTELLDLKPLPVSSLGNVAYEALYRFSHFNPIQTQIFHVLYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQPDMKVIYIAPLKAIVRERMGDWQRRLVSQLGKKMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHTRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTERAIRFVGLSTALANAGDLADWLGVEETGLFNFKPSVRPVPLEVHIQGYPGKYYCPRMNSMNKPAYAAICTHSPAKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFLDMPEDALQMVLSQVSDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQILVCTSTLAWGVNLPAHLVIIKGTEYYDGKSKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLREHLHDHLNAEIISGTICNKQDAVHYLTWTYLFRRLMVNPAYYGLENADPEFISSYLSSLVQSTFEDLEDSGCIKMNEDTVESMMLGSIASQYYLSYMTVSMFGSNIGPDTSLEVFLHVLSAASEFDELPVRHNEEKYNEGLSQKVKYPVDNNRLDDPHVKANLLFQAHFSQLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSLTCMHLLQMVMQGLWFEKDSSLWMLPCMNADLMQSLSRSGISSVQELLDIPKASLQNVTGSFPASRLYQDLQHFPRVKMKLKLQKKETNGESSDALYIRLEKSNSRRHSSQAFVPRFPKIKEEQWWLVLGNTSTSAELYALKRVSFSDQLVTLMKLPHTPSNLKGMKLILVSDCYIGFEQEHSIEGLIGGRH* 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2581 1142 Gene3D - 736 829 IPR036388 -
Amo10g2581 1142 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 554 763 IPR001650 -
Amo10g2581 1142 CDD SF2_C_Ski2 530 718 - -
Amo10g2581 1142 Gene3D - 304 530 IPR027417 -
Amo10g2581 1142 SMART helicmild6 618 706 IPR001650 -
Amo10g2581 1142 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 348 523 IPR014001 -
Amo10g2581 1142 SUPERFAMILY Sec63 N-terminal domain-like 19 194 - -
Amo10g2581 1142 SUPERFAMILY "Winged helix" DNA-binding domain 734 834 IPR036390 -
Amo10g2581 1142 SUPERFAMILY Sec63 N-terminal domain-like 855 1010 - -
Amo10g2581 1142 Gene3D C2 domain 1025 1137 IPR035892 -
Amo10g2581 1142 Gene3D - 830 966 - -
Amo10g2581 1142 Pfam DEAD/DEAH box helicase 341 505 IPR011545 GO:0003676|GO:0005524
Amo10g2581 1142 CDD DEXHc_ASCC3_2 338 526 - -
Amo10g2581 1142 Gene3D C2 domain 193 302 IPR035892 -
Amo10g2581 1142 Gene3D - 136 190 - -
Amo10g2581 1142 Gene3D - 531 735 IPR027417 -
Amo10g2581 1142 Gene3D - 4 134 - -
Amo10g2581 1142 PANTHER SEC63 DOMAIN-CONTAINING 1 1135 - -
Amo10g2581 1142 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 1 1135 - -
Amo10g2581 1142 SMART ultradead3 335 539 IPR014001 -
Amo10g2581 1142 Pfam Sec63 Brl domain 823 1134 IPR004179 -
Amo10g2581 1142 SMART Sec63_2 1 299 IPR004179 -
Amo10g2581 1142 SMART Sec63_2 822 1136 IPR004179 -
Amo10g2581 1142 Coils Coil 152 172 - -
Amo10g2581 1142 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 525 734 IPR027417 -
Amo10g2581 1142 Pfam Sec63 Brl domain 1 297 IPR004179 -
Amo10g2581 1142 SUPERFAMILY E set domains 1044 1134 IPR014756 -
Amo10g2581 1142 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 523 IPR027417 -
Amo10g2581 1142 Pfam Helicase conserved C-terminal domain 619 704 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2581 Amo-Chr10 88800215 88814292 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2581 K18663 - gmx:100811503 2115.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3899 01 112500085 112503032 Amo10g2581 10 88800215 88814292 PCT
Amo10g2581 10 88800215 88814292 Amo01g3899 01 112500085 112503032 PCT