Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3899 ATGAAATTCGGAAAGAGCCTGAGTAACCAGATCGAGAAAACCCTACCGGAATGGCGCGACAAGTTRCTCTCCTACAAGGAGCTCAAGAAGAAGCTCAAGCAATTGGACCCTGCTCCTAAGTCCGACGACCGCCCTGCCAAACGCCCTAGGCTCGACGCCRCCGGAGATTCCGACMCCGCCGCYCCGGAAATCTCCAAGGAGGAACTTGACTTCAGGAATCTCCTTGAAAAAGAGCTCGAGAAATTCAATAACTTCTTCGTCGAGAAGGAGGAAGAGTACATTATCAGGCTCAAGGAGCTTCAGGACAGGGTGGCCAAGGTGAAGGTTTCCAGTGAAGAGTTGATGAAAATTCGCAAGGAAATTGTGGATTTTCATGGAGAGATGGTCTTGCTGGAGAACTACAGTGCCCTTAACTACACAGGGCTAGTGAAAATACTGAAAAAGTATGACAAGAGAACTGGTGCTCTKATCCGGTTGCCCTTCATACAGAAGGTCTTGCAACAACCTTTCTTTACCACTGATCTGCTRTACAAGCTAGTGAAGGAGTGCGAAGCAATGCTTGATCGRCTTTTCCCYGTMATTGATTCTCCACCTTCTGGCGAGACAACTCCCCAAGCTGAAGGATGTGYTCCTTCAACTTCCACCACTACCAAGAGCAATGGTTTCTTGATACCTAAGGAATTATCAGAGATCGAGTACATGGAGAGCCTCTACATGAAGAGTACRATATCAGCATTGCACGTATTGCAGGAAATTAGAAGCGGGAGCTCGACAGTTAGTGTTTTTTCGTTGCCGCCACTGAAGATTAGTGGATTGGAAGAAACATGGAAGAAAGTTCCAGTTCTGGAACAAGCYGCCAAGTAA 864 0.4664 MKFGKSLSNQIEKTLPEWRDKLLSYKELKKKLKQLDPAPKSDDRPAKRPRLDAXGDSDXAAPEISKEELDFRNLLEKELEKFNNFFVEKEEEYIIRLKELQDRVAKVKVSSEELMKIRKEIVDFHGEMVLLENYSALNYTGLVKILKKYDKRTGALIRLPFIQKVLQQPFFTTDLLYKLVKECEAMLDRLFPVIDSPPSGETTPQAEGCXPSTSTTTKSNGFLIPKELSEIEYMESLYMKSTISALHVLQEIRSGSSTVSVFSLPPLKISGLEETWKKVPVLEQAAK* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3899 287 PANTHER SPX DOMAIN-CONTAINING PROTEIN 3 1 287 IPR031142 GO:0016036
Amo01g3899 287 CDD SPX_AtSPX1_like 2 152 - -
Amo01g3899 287 PANTHER SPX DOMAIN-CONTAINING PROTEIN 2 1 287 - -
Amo01g3899 287 ProSiteProfiles SPX domain profile. 1 163 IPR004331 -
Amo01g3899 287 Coils Coil 72 92 - -
Amo01g3899 287 MobiDBLite consensus disorder prediction 33 59 - -
Amo01g3899 287 Pfam SPX domain 106 165 IPR004331 -
Amo01g3899 287 Pfam SPX domain 1 45 IPR004331 -
Amo01g3899 287 MobiDBLite consensus disorder prediction 33 54 - -
Amo01g3899 287 Coils Coil 97 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3899 Amo-Chr1 112500085 112503032 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3899 - - gmx:100787780 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3899 01 112500085 112503032 Amo10g2581 10 88800215 88814292 PCT
Amo10g2581 10 88800215 88814292 Amo01g3899 01 112500085 112503032 PCT