Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2550 ATGCGCCGCCGAGCTGCCGCCGAGTTCCGGCGCCGTGTTCGGCGGAGGTTTTCTTATTGGATCTGGTTTCTCCTCGCCGCCTTCTCTCTTGCGGCTTTGCTTTTGTTCGTAGTGCAGCACAATCATCGCCAAGATCAGTTTCAGCTTCCGCTAACGGAGAGGAATGCCAGAGGTGAACTTGCAAAAGAGAGTATGAATTTTTCCAATGAAATTTTAAGTGCAACTTCCTTTTCACGACAGTTAGCAGAGCAAATGGTTCTGGCCAAGGCATATGTGGTCATTGCCAAAGCACACAATAATCATCATTTTGCCTGGCAGCTTAGTTCAAAGATTAGAATTTGCCAGCTTTTGCTTTCAAAAGCTGCCATGACTGGGGAGCCCATTACCTTGGACGAAGCTGAGCCAATTATTAAAAGCCTCTCTTCCCTGATTTTCAAGGCACAAGATGTCCATTATGACATTGCTACCACTATAGTAACAATGAAGTCGCACATTCAAGCTCTCGAAGAACGTGCTAATGTTGTAACAGTTCAAAGCACAGTGTTTGCTCAAATATCAGCCGAAGCACTGCCAAAGAGTCTTCATTGCCTAAATGTGAAACTTATGACTGATTGGCTAAGGACATTGTCCCTGCAAAAACTCTCAAACGAGTGGAAAACTTCTCGTCTCAAGGACAACAGTTTATATCATTTCTGCATTTTTTCAGATAATGTGCTTGCAACATCAGTTGTTGTTAACTCTACAGTTGTCAATGCAGACCACCCAAAACAATTGATCTTTCACATTGTCACCAATGATGACAATTATGGAGCAATGCAAGCATGGTTCCTTAGTAATGACTTTAAAGGGGCCATCATAGAGGTGCAGAATTTTGAGGACTTTCATTGGTTGAATGAAAATTATTCTCCGATTATCAAACAGCTACACAATCCAGAATCTCAAGCCTTCTATTTTGGAGCTTATCAAGATGTGAATATCGAATCAAAAGTTCGGAACCCCAAGTATTTGTCTGTACTTAATCATCTTCGGTTTTACATCCCTGAGATTTATCCACAACTTGAGAAGGTTGTTTTCCTTGACGATGATGTTGTCGTCCAGAAGGACCTCACCATACTTTTCTCGCTGGATTTGCATGGAAATGTGAATGGTGCAGTTGAAACTTGTCTTGAAGCGTTTCACCGGTACTACAAGTATCTAAACTTCTCAAATTCAATTATAAGCTCAAAGTTCGATCCACAGGCATGTGGATGGGCATTTGGCATGAACATTTTTGACTTGGTTGCATGGAGGAAAGCAGATGTGACAGCAAGATATCACTATTGGCTGGAGCAAAATGCCAATGGCACACTCTGGAAGCTTGGCATGCTTCCTCCAGCTCTTCTAAGTTTCTATGGTTTGACAGAACCACTTGATAGAAGATGGCATGTTTTAGGATTGGGTTATGACTTAAATATTGACAACCGTCTAATTGAAAGCGCTGCAGTTATCCACTTCAATGGGAACATGAAGCCATGGCTGAAGTTAGCTATAGGCAGGTATAAGCCACTGTGGCACAGGTACATAAATCAAAGTCACCCTCACCTTCTAGATTGTGCCAGTAGTTAA 1605 0.4224 MRRRAAAEFRRRVRRRFSYWIWFLLAAFSLAALLLFVVQHNHRQDQFQLPLTERNARGELAKESMNFSNEILSATSFSRQLAEQMVLAKAYVVIAKAHNNHHFAWQLSSKIRICQLLLSKAAMTGEPITLDEAEPIIKSLSSLIFKAQDVHYDIATTIVTMKSHIQALEERANVVTVQSTVFAQISAEALPKSLHCLNVKLMTDWLRTLSLQKLSNEWKTSRLKDNSLYHFCIFSDNVLATSVVVNSTVVNADHPKQLIFHIVTNDDNYGAMQAWFLSNDFKGAIIEVQNFEDFHWLNENYSPIIKQLHNPESQAFYFGAYQDVNIESKVRNPKYLSVLNHLRFYIPEIYPQLEKVVFLDDDVVVQKDLTILFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNSIISSKFDPQACGWAFGMNIFDLVAWRKADVTARYHYWLEQNANGTLWKLGMLPPALLSFYGLTEPLDRRWHVLGLGYDLNIDNRLIESAAVIHFNGNMKPWLKLAIGRYKPLWHRYINQSHPHLLDCASS* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2550 534 CDD GT8_like_1 229 522 - -
Amo10g2550 534 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 230 529 IPR029044 -
Amo10g2550 534 SUPERFAMILY Nucleotide-diphospho-sugar transferases 229 531 IPR029044 -
Amo10g2550 534 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 5 534 IPR029993 GO:0047262
Amo10g2550 534 PANTHER HEXOSYLTRANSFERASE 5 534 - -
Amo10g2550 534 Pfam Glycosyl transferase family 8 233 508 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2550 Amo-Chr10 88155819 88159563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2550 1 531 Glycosyltransferase AT2G20810 54.664 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2550 K13648 - gmx:100817381 879.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2425 11 128890668 128894889 Amo10g2550 10 88155819 88159563 PCT
Amo10g2550 10 88155819 88159563 Amo11g2425 11 128890668 128894889 PCT