Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1896 ATGAGATGGCAAGAACGCAAAAGAACAAGGCTACTGCTCATCATTTGGGCTTTGCTGAAGGCTAAACTGGCAAAGCTGCGGAGGGAACTCCTTACTCCTTCATCAAAAGGTGCTGGAGGTGCTGGTGAAGGTTTTGATGTTACTAAAAGTGGTGATTTAAGAGTTGGTCTTGTGGTTTTCCCTTCAGTTGGCAAATCTACTCTACTGAATAAATTGACTGGGACATTTTCAGAGGTTGCTTCCTACGAGTTTACAACCTTAACTTGCATCCCTGGCGTGATCACGTATCGTGGAGCTAAAATTCAGTTGCTGGATCTCCCTGGAATTATTGAGGGTGCTAAAGATGGAAAGGGTAGAGGAAGACAGGTTATCAGTACTGCAAGGACTTGCAATTGTATTTTAATTGTTCTTGATGCCATAAAGCCAATAACTCATAAGCGGCTTATAGAAAAAGAGCTGGAGGGATTTGGTATAAGGTTAAATAAAGAGCCACCAAATCTGACTTTTAGGAAGAAAGATAAAGGTGGAATCAACCTCACTTCAACGGTTACCAACACACATTTGGATCTTGACACTGTGAAGGCTATATGTAGTGAGTACAAAATTCACAATGCAGATATTACTCTCAGATATGATGCTACTGCCGATGACCTTATAGATGTTATCGAGGGAAGTAGAGTATACATGCCTTGCATCTATGTTGTGAACAAGATTGATCAGATCACACTTGAGGAATTAGAGATATTGGATAAGCTACCTCATTACTGCCCAATCAGTGCACACCTGGAGTGGAACCTCGATGGTCTTCTGGAGAAAATTTGGGAATATCTCAATTTAACTCGTATTTATACTAAACCTAAAGGGATGAATCCTGACTACGAGGACCCGGTAATATTGTCATCTAAAAGAAGAACAGTTGAGGACTTCTGCAATCGCATTCACAAGGATATGCTTAAACAGTTTAAGTATGCTCTGGTCTGGGGTTCAAGTGCGAAGCACAAGCCTCAAAGAGTTGGCAAGGAGCATGAACTTGAAGATGAAGACGTGGTTCAGATTATCAAGAAGGTATAA 1071 0.4108 MRWQERKRTRLLLIIWALLKAKLAKLRRELLTPSSKGAGGAGEGFDVTKSGDLRVGLVVFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKEPPNLTFRKKDKGGINLTSTVTNTHLDLDTVKAICSEYKIHNADITLRYDATADDLIDVIEGSRVYMPCIYVVNKIDQITLEELEILDKLPHYCPISAHLEWNLDGLLEKIWEYLNLTRIYTKPKGMNPDYEDPVILSSKRRTVEDFCNRIHKDMLKQFKYALVWGSSAKHKPQRVGKEHELEDEDVVQIIKKV* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1896 356 ProSiteProfiles TGS domain profile. 278 354 IPR004095 -
Amo10g1896 356 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 314 IPR027417 -
Amo10g1896 356 CDD TGS_DRG1 276 355 - -
Amo10g1896 356 Gene3D - 271 356 IPR012675 -
Amo10g1896 356 Pfam TGS domain 281 354 IPR004095 -
Amo10g1896 356 CDD DRG 54 285 IPR045001 GO:0003924|GO:0005525
Amo10g1896 356 Gene3D - 9 111 IPR027417 -
Amo10g1896 356 PANTHER - 16 355 IPR045001 GO:0003924|GO:0005525
Amo10g1896 356 Pfam 50S ribosome-binding GTPase 54 146 IPR006073 GO:0005525
Amo10g1896 356 SUPERFAMILY TGS-like 301 354 IPR012676 -
Amo10g1896 356 Gene3D - 117 227 - -
Amo10g1896 356 TIGRFAM small_GTP: small GTP-binding protein domain 52 204 IPR005225 GO:0005525
Amo10g1896 356 ProSitePatterns GTP1/OBG family signature. 105 118 IPR006074 GO:0005525
Amo10g1896 356 Pfam C-terminal region of MMR_HSR1 domain 174 279 IPR031662 -
Amo10g1896 356 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 53 278 IPR031167 GO:0005525
Amo10g1896 356 PRINTS GTP1/OBG GTP-binding protein family signature 55 75 IPR006073 GO:0005525
Amo10g1896 356 PRINTS GTP1/OBG GTP-binding protein family signature 120 138 IPR006073 GO:0005525
Amo10g1896 356 PRINTS GTP1/OBG GTP-binding protein family signature 103 118 IPR006073 GO:0005525
Amo10g1896 356 PRINTS GTP1/OBG GTP-binding protein family signature 76 94 IPR006073 GO:0005525
Amo10g1896 356 PANTHER DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 1 16 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1896 Amo-Chr10 68217078 68222662 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1896 K06944 - gmx:100797441 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g1896 10 68217078 68222662 Amo20g2404 20 112229581 112230819 hybridization