Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1618 ATGGCATTATACACAAAAAACGTTTCTTCTTATTTCACAGGCATTCCATCAGCATCATCATGGTTCGAGCTATATGCTGCCTTCTCCACCTTCATGATGCTTCTCAGAACAGCAATCAACGACATGGTTCCTCGTCAACTCCGTAACTTGATCACCACAAAGCTCGAATCTTTCTTCGCCAAGTTCCAGTCCGGCAACCAAGTCTCCCTCAAGATCGACCGCAGTTGGGACAGAACCTCCGGCAAGAACCGCAACGAACTCTACCATGCCGCACACGAATACCTTCCTTCAAGGATCAACAGAACCTACAAGACACTCAAAGTTGGCAAGCTTGAAGATTGCAAGAACCTCGTGCTTGCCGTTGATGGAAACCATGAAGTTGTGGATGAATTTGAAGGAAGCAAGTTCACGTGGATGCTCGATGAGAAAACCGAGAAGGATTCCTCCAAGCCCAAGTACACATTCATATTGAGCTTCCATGAGAAGCAGAGAGAGAAAGCCATGGAGAGGTACATACCTCATGTGCTGAGAACCTACGAGGCCATGAAAGCGGAGCAGAAGATTGTTAAAATCTACTCCAGGTCTTGTGATTACTGGGAACAGAGTGAGTTAACTCACCCTGCTACTTTTGACACGCTTGCCTTGGATCCTGAGTTGAAGACATCCATCATTGATGACTTGGATCGGTTCTTGAGGAGGAAGGAGCTGTACAAGAGAGTCGGGAAGCCATGGAAACGGGGATACCTCTTGTACGGACCTCCAGGAACTGGGAAATCTAGCTTGGTTGCGGCCATTGCTAACTACTTGAAGTTCGATGTGTATGATTTGGAGCTTAACTCTGTTTTCTCCAACTCGGATCTCATGAGAGCAATTAGGAACACATCAAACCGTTCCATTATTGTGATTGAAGACATTGATTGTAACAAAGAGGTGCAGCCTCGATCACCAACGGAAGCCCTTTCAAGTCCCCAAGATTCAGAGTCTGACAAGGACGGGTTCGGGAAGGGAAAGGGGTTTACGCTCTCTGGTTTGCTGAACTACATGGATGGGTTGTGGTCAAGCTGTGGAGAAGAGAGGATCATGGTGTTCACCACAAACCACAAAGAGAGGATTGATGGGGCGTTGCTGAGGCCGGGTCGCATGGACATGCACATCAACTTGTCATTTCTTAAGGGTAAAGGCTTCAGAGTCTTGGCTTCCAATTATCTTGGACTTGATGGCCATCACCCTCTCTTTCAGCAGATCGATGACTTGTTGGAAAAAACAGAGGTCACCCCTGCAGTTGTGGCTGAGCACCTTATGAGATACGAGGACCCTCATCATTCTTTGGAAGCAATTGTCAAATTCCTCACACAAATGGACGCGCAGAATCAACTGGACTTGCAATTCACTACTACTACACCATCAACTTAG 1413 0.4692 MALYTKNVSSYFTGIPSASSWFELYAAFSTFMMLLRTAINDMVPRQLRNLITTKLESFFAKFQSGNQVSLKIDRSWDRTSGKNRNELYHAAHEYLPSRINRTYKTLKVGKLEDCKNLVLAVDGNHEVVDEFEGSKFTWMLDEKTEKDSSKPKYTFILSFHEKQREKAMERYIPHVLRTYEAMKAEQKIVKIYSRSCDYWEQSELTHPATFDTLALDPELKTSIIDDLDRFLRRKELYKRVGKPWKRGYLLYGPPGTGKSSLVAAIANYLKFDVYDLELNSVFSNSDLMRAIRNTSNRSIIVIEDIDCNKEVQPRSPTEALSSPQDSESDKDGFGKGKGFTLSGLLNYMDGLWSSCGEERIMVFTTNHKERIDGALLRPGRMDMHINLSFLKGKGFRVLASNYLGLDGHHPLFQQIDDLLEKTEVTPAVVAEHLMRYEDPHHSLEAIVKFLTQMDAQNQLDLQFTTTTPST* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1618 470 CDD AAA 233 388 - -
Amo10g1618 470 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 15 458 - -
Amo10g1618 470 ProSitePatterns AAA-protein family signature. 359 377 IPR003960 GO:0005524|GO:0016887
Amo10g1618 470 PANTHER BCS1 AAA-TYPE ATPASE 15 458 - -
Amo10g1618 470 Gene3D - 386 454 - -
Amo10g1618 470 SMART AAA_5 244 391 IPR003593 -
Amo10g1618 470 Gene3D - 200 385 IPR027417 -
Amo10g1618 470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 438 IPR027417 -
Amo10g1618 470 MobiDBLite consensus disorder prediction 312 333 - -
Amo10g1618 470 Pfam Domain associated at C-terminal with AAA 43 140 IPR025753 -
Amo10g1618 470 Pfam ATPase family associated with various cellular activities (AAA) 249 387 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1618 Amo-Chr10 56132186 56134122 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1618 237 385 Miscellaneous Gene Families AT3G02450 33.544 9.59e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1618 - K08900 gmx:100789094 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g1618 10 56132186 56134122 Amo17g2441 17 121312140 121314247 hybridization