Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0023 ATGGGTGTGACTAAGATCTCATCAACAACGCTTCCTCTCATGGCTGCCATAACCCTAACCATATTATTATTATTATCACAAGTTTGTTATGCACAAAACGCACCCCAAGACTACATCAACGCTCACAACAATGCCCGTTCCAAAGTTGGGGTTGGTCCAATGACATGGAATACAACCCTTGCTTCTTTTGCACAAAACTATACTAACAAACTCAAAGAAAGTTGTAACTTGGTGCACTCTGGGGGTCCTTATGGAGAGAACCTTGCAGGGAGTAGCGGCGATCTTACGGGCACCGCCGCGGTGAACTTGTGGGTGGCGGAGAAGCAATACTATCACTACAACTCTAATTCTTGTGACTCCGGCAAGGTTTGCGGCCACTATACTCAGGTGGTTTGGCGCAGCTCGATTCATCTTGGGTGTGCCAAAGAGAGGTGTAAGAATGGAGGAACAGTTATAAGTTGTAACTATGCTCCACATATTTTCGTACAGATTCGCAAGATAATCAACAAGGAGTGCAGCCATGCCCACTTTCAACTTGCAAGGTTAGGCATTGTGGCCGATATAACCGCCTATGCTCAAGATTCACCGCAAGACTATCTTGATGCTCACAACGCAGCAAGATCAGAGGCAGGTGTAGCCGATTTGGCTTGGGACGACGACGTTGCGGCGTTCGCCGAGAACTACGCATCGGAACGCCAAGGGGACTGCGAAATGATCCACTCCGGTGGCGGCGACGAGGGTTACGGCGAGAACATTGCATGGAGCAGTGGTGATCTTGCAGGCAGCGAAGCAGTGGCAATGTGGGCGGATGAGAAAGACAAGTATGACTACGATTTAAACTCATGTGTTGGCGGAGAGTGCCGTCACTACACTCAAGTTGTTTGGAGTAACACTATTCGGCTTGGATGTGCCAAAGTGAATTGCGATAATGGAGGCACTTTCATTACTTGTAACTACCATCCTCCAGGAAATTATGTTCACCAAAGGCCTTACTAG 996 0.4809 MGVTKISSTTLPLMAAITLTILLLLSQVCYAQNAPQDYINAHNNARSKVGVGPMTWNTTLASFAQNYTNKLKESCNLVHSGGPYGENLAGSSGDLTGTAAVNLWVAEKQYYHYNSNSCDSGKVCGHYTQVVWRSSIHLGCAKERCKNGGTVISCNYAPHIFVQIRKIINKECSHAHFQLARLGIVADITAYAQDSPQDYLDAHNAARSEAGVADLAWDDDVAAFAENYASERQGDCEMIHSGGGDEGYGENIAWSSGDLAGSEAVAMWADEKDKYDYDLNSCVGGECRHYTQVVWSNTIRLGCAKVNCDNGGTFITCNYHPPGNYVHQRPY* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0023 331 CDD CAP_PR-1 35 159 - -
Amo10g0023 331 SMART SCP_3 194 327 IPR014044 -
Amo10g0023 331 SMART SCP_3 33 164 IPR014044 -
Amo10g0023 331 PRINTS Allergen V5/Tpx-1 family signature 100 113 IPR001283 -
Amo10g0023 331 PRINTS Allergen V5/Tpx-1 family signature 124 140 IPR001283 -
Amo10g0023 331 PRINTS Allergen V5/Tpx-1 family signature 314 327 IPR001283 -
Amo10g0023 331 PRINTS Allergen V5/Tpx-1 family signature 54 72 IPR001283 -
Amo10g0023 331 PANTHER PATHOGENESIS-RELATED PROTEIN 1 24 159 - -
Amo10g0023 331 PANTHER PATHOGENESIS-RELATED PROTEIN 1 188 331 - -
Amo10g0023 331 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 24 159 IPR001283 -
Amo10g0023 331 CDD CAP_PR-1 196 331 - -
Amo10g0023 331 SUPERFAMILY PR-1-like 193 331 IPR035940 -
Amo10g0023 331 SUPERFAMILY PR-1-like 29 158 IPR035940 -
Amo10g0023 331 ProSitePatterns CRISP family signature 1. 288 298 IPR018244 GO:0005576
Amo10g0023 331 ProSitePatterns CRISP family signature 1. 125 135 IPR018244 GO:0005576
Amo10g0023 331 ProSitePatterns CRISP family signature 2. 314 325 IPR018244 GO:0005576
Amo10g0023 331 PRINTS Venom allergen 5 signature 262 277 IPR002413 -
Amo10g0023 331 PRINTS Venom allergen 5 signature 215 233 IPR002413 -
Amo10g0023 331 PRINTS Venom allergen 5 signature 286 305 IPR002413 -
Amo10g0023 331 PRINTS Venom allergen 5 signature 147 158 IPR002413 -
Amo10g0023 331 Pfam Cysteine-rich secretory protein family 200 319 IPR014044 -
Amo10g0023 331 Pfam Cysteine-rich secretory protein family 40 156 IPR014044 -
Amo10g0023 331 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 188 331 IPR001283 -
Amo10g0023 331 Gene3D CAP 194 331 IPR035940 -
Amo10g0023 331 Gene3D CAP 33 165 IPR035940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0023 Amo-Chr10 308729 321677 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0023 K13449 - zju:107413742 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0721 20 10497213 10497677 Amo10g0023 10 308729 321677 hybridization