Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0731 ATGAAGAGACCTTCAGCTCTGGTGGATGTGTTTCTGGTACTTGCATTGTTTAGTTGCAACTCATGGACAACGCGGAGCAGCTCAGAAAGCTGCAATCCAAATTATGTTGAGGACATTCGACCTCATAGTGTTAGTATTACTGAATTTGGAGCCGTTGGAGATGGAATCACTCTCAACACAAAAGCATTTCAGAATGCCATTTTCTACCTAAATTCTTTCGCAGACAAAGGCGGAGCAAAGCTTTTTGTCCCAGCTGGCCAATGGTTAACCGGAAGTTTTGATCTTATCAGCCACCTAACTTTGTGGTTGGACAAGGATGCAGTAATTCTTGGATCAACGAACTCTGATGATTGGCCCATTGTGGATTCCCTACCCTCATATGGTCGAGGAAGGGAGTTGCCTGGTGGAAGGCATAAAAGCCTCATTTATGGTAACAATTTGACTGATGTTATCATTACAGGTAATAATGGAACTATAGATGGTCAAGGGAGTATCTGGTGGAGCAGGTTTCGGAACAAAACATTGGACTATACACGTCCCCATTTGGTTGAATTGATGAATTCATCTGGGATTCTCATTTCAAATTTAACCTTCTTGAATTCACCATTTTGGAATATTCACCCTGTATATTGCAGCCATGTTACAGTTCAAAATGTCACAATCCATGCTCCCTCCAGTTCTCCGAATACAGATGGGATAAATCCAGATTCTTCAGATGATATATGCATTGAAGATTGTTACATAAGCACCGGCGACGATCTGGTTGCCATCAAAAGTGGTTGGGATGAATATGGAATTTCGTTTGGTCGTCCTAGTACAAACATTGTCATCCGTAGGCTCGTTGGGAAAACAACAAGCGCAGGAATCGCTATTGGAAGTGAGATGTCTGGAGGTGTTTCAGATGTTTTTGCAGAGGATATTTACATTTTTGATTCGCATACAGGGATTGGAATAAAGACTGCTCGCGGAAGGGGTGGTTATGTTCGAAATGTCTATATCTCAAAAATGACATTGGATAATGTAGATATTGCTATTAGGCTCAATGGCTTATACAAAGAACATCCTGATGATGATTACAACCCAGATGCTTTGCCTGTAATAGAAAAGATTACTATCAAGGATGTGATAGGAGAAAATATCAAACGCGCAGGCCTTATACAAGGTATAAAAGGTGACAATTTTGTCAACATTTGCCTATCAAATATCACACTTAGTGTGAGCTCAAAAACTCCATGGAACTGCTCGAACGTTGAAGGATACTCGGATTTGCTTTCGCCTGAAGCTTGTGATCCTCTCGAAGAAAGTATATTCCCGGAGCATGTTTCAGATTGTTACAATCCAGAAAATCCATTAAGGAGTTCAAGCACTAGAAATCAAGGTGCTTCCTGGTTGCTGTCTTGGTAA 1404 0.4103 MKRPSALVDVFLVLALFSCNSWTTRSSSESCNPNYVEDIRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDDWPIVDSLPSYGRGRELPGGRHKSLIYGNNLTDVIITGNNGTIDGQGSIWWSRFRNKTLDYTRPHLVELMNSSGILISNLTFLNSPFWNIHPVYCSHVTVQNVTIHAPSSSPNTDGINPDSSDDICIEDCYISTGDDLVAIKSGWDEYGISFGRPSTNIVIRRLVGKTTSAGIAIGSEMSGGVSDVFAEDIYIFDSHTGIGIKTARGRGGYVRNVYISKMTLDNVDIAIRLNGLYKEHPDDDYNPDALPVIEKITIKDVIGENIKRAGLIQGIKGDNFVNICLSNITLSVSSKTPWNCSNVEGYSDLLSPEACDPLEESIFPEHVSDCYNPENPLRSSSTRNQGASWLLSW* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0731 467 Gene3D - 21 422 IPR012334 -
Amo09g0731 467 SUPERFAMILY Pectin lyase-like 39 431 IPR011050 -
Amo09g0731 467 SMART pbh1 238 270 IPR006626 -
Amo09g0731 467 SMART pbh1 272 293 IPR006626 -
Amo09g0731 467 SMART pbh1 142 195 IPR006626 -
Amo09g0731 467 SMART pbh1 211 237 IPR006626 -
Amo09g0731 467 SMART pbh1 299 320 IPR006626 -
Amo09g0731 467 SMART pbh1 328 349 IPR006626 -
Amo09g0731 467 PANTHER OS07G0245200 PROTEIN 7 452 - -
Amo09g0731 467 PANTHER PECTIN LYASE-RELATED 7 452 - -
Amo09g0731 467 Pfam Glycosyl hydrolases family 28 137 418 IPR000743 GO:0004650|GO:0005975
Amo09g0731 467 MobiDBLite consensus disorder prediction 448 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0731 Amo-Chr9 12063771 12066665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0731 1 467 Glycoside Hydrolase AT3G62110 67.300 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0731 - - gmx:100786985 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0968 16 15602902 15606395 Amo09g0731 09 12063771 12066665 PCT
Amo06g0069 06 741650 745131 Amo09g0731 09 12063771 12066665 PCT
Amo09g0731 09 12063771 12066665 Amo16g0968 16 15602902 15606395 PCT
Amo09g0731 09 12063771 12066665 Amo06g0069 06 741650 745131 PCT