Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0069 ATGAGGAGAACTTCTACACTTGTGGGTGTGCTTCTGGTACTTACATTAATCAGCTGTGGCCCATGGAGAGTGTGGAGCAGCTCACTTTGCAAGCAGACAAATTTGGAGGTTAGACCTCACAGCGTTAGTATTACAGAATTTGGCGCAGTTGGAGACGGGGTCACTCTCAACACAAAAGCATTTCAGAATGCAATATTTTACCTTAATTCATTTGCAGACAAAGGCGGAGCGAAGCTCTTTGTCCCGGCTGGCCGTTGGTTGACCGGTAGTTTTGATCTCATCAGCCATCTAACTCTCTGGTTGGACAAAGATGCTGTAATTCTTGGATCCACAAACCCTGATGATTGGCCAGTTGTTGATCCTCTACCGTCATATGGGCGAGGAAGGGAGTTGCCGGGTGGAAGGCACAAGAGCCTCATTTATGGACAAGATTTGACTGATGTTGTTATAACAGGTAACAATGGAACAATTGATGGTCAAGGGAGTATTTGGTGGAGCCTGTTTAGGAACAAAACCTTGGATTATACGCGTCCCCATTTGGTAGAATTGATGAACTCGGCGGGGGTTCTCATCTCGAATTTAACCTTCTTAGATTCTCCATTTTGGAATATACATCCTGTATATTGCAGCCAAGTTACAGTTAAGAAAGTCAAGATCCTTGCTCCTCTTGATTCTCCAAACACGGATGGGATTGATCCAGATTCTTCCGACAATGTATGCATTGAAGACTGTTATATAAGCACGGGTGATGATCTGATTGCCATCAAAAGTGGCTGGGACGAGTATGGCATAGCATTCGGCCGTCCCAGCACAAACATTATCATCAACAGGCTCACCGGGAGGACGGCAACGAGTGCAGGGATTGCCATTGGAAGTGAGATGTCTGGTGGTGTATCAGAAGTCCATGCCCAAGACATTCGCTTCTTCGATTCATACAGCGCCATCAGAATAAAGACTTCTCCAGGGAGAGGTGGTTATGTTAGAAATGTCTTTGTCTCTAACATGACTTTAGAAAATGTTGACATTGCTATCAGGTTCACTGGTACATATGGGGATCATCCTGATGATAAATTTGATCCAAATGCATTACCATTGATAGAAAAGATTACAATCAAGGATGTGATTGGCCAAAACATCAAGCGCGCCGGCCTTCTAGAAGGCATAGAAGGAGACAACTTTGTAAACATCTGTCTATCAAACATCATCCTTAATGTGAGCTCAAGCTATTCATGGAACTGCTCTAATGTCCAAGGATATTCCGATTTCGTTTCGCCGGAAGCTTGCAAGCCTCTCAAGGAGAGAATATTCCCAGAGCATTGTTCAGACTGTTACAATTTATCCAATCACCTGCAAAGTTCAAATAATCAAACAAGAGCAGGACAAATTTCAGGTGACATACAATGTTGA 1407 0.4371 MRRTSTLVGVLLVLTLISCGPWRVWSSSLCKQTNLEVRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNPDDWPVVDPLPSYGRGRELPGGRHKSLIYGQDLTDVVITGNNGTIDGQGSIWWSLFRNKTLDYTRPHLVELMNSAGVLISNLTFLDSPFWNIHPVYCSQVTVKKVKILAPLDSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGIAFGRPSTNIIINRLTGRTATSAGIAIGSEMSGGVSEVHAQDIRFFDSYSAIRIKTSPGRGGYVRNVFVSNMTLENVDIAIRFTGTYGDHPDDKFDPNALPLIEKITIKDVIGQNIKRAGLLEGIEGDNFVNICLSNIILNVSSSYSWNCSNVQGYSDFVSPEACKPLKERIFPEHCSDCYNLSNHLQSSNNQTRAGQISGDIQC* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0069 468 PANTHER OS07G0245200 PROTEIN 8 451 - -
Amo06g0069 468 Gene3D - 27 422 IPR012334 -
Amo06g0069 468 SUPERFAMILY Pectin lyase-like 35 431 IPR011050 -
Amo06g0069 468 PANTHER PECTIN LYASE-RELATED 8 451 - -
Amo06g0069 468 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Amo06g0069 468 SMART pbh1 298 319 IPR006626 -
Amo06g0069 468 SMART pbh1 270 292 IPR006626 -
Amo06g0069 468 SMART pbh1 209 235 IPR006626 -
Amo06g0069 468 SMART pbh1 236 268 IPR006626 -
Amo06g0069 468 SMART pbh1 327 348 IPR006626 -
Amo06g0069 468 Pfam Glycosyl hydrolases family 28 137 417 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0069 Amo-Chr6 741650 745131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0069 1 459 Glycoside Hydrolase AT3G62110 69.593 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0069 - - gmx:100782602 808.135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0968 16 15602902 15606395 Amo06g0069 06 741650 745131 hybridization
Amo06g0069 06 741650 745131 Amo09g0731 09 12063771 12066665 PCT
Amo09g0731 09 12063771 12066665 Amo06g0069 06 741650 745131 PCT