Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0054 ATGTTATCCGGGTCGGGTTCATCGGTGATGTGGTTTCGGAAAGGTCTTCGGATCCACGACAACCCGGCGCTACAACTTGCTTCACAAGGWGCGTCTCATCTCTACCCGCTATTCGTGGTGGACCCGCATTATATGGAGCCTGACCCGACCTCATTCTCGCCCGGTTCGTCGCGCGCGGGTCTTAACCGCATCAAGTTCTTGCTGGAGAGTCTTGTGGACTTGGATCTCAGCCTCAAGAACCTTGGCTCGCGTTTATTGGTTCTTAAGGGTGACCCTGCCGAAGTTCTCATTCGCTGCTTGAAGGAGCAGTGGAACGTCAGAAAGCTATGTTTTGAGTATGACACTGAGCCATATTATCAGGCTCTAGATACTAAAGTAAAGAACTTTGCACTTGGAGCTGGGATTGAGGTTTTCTCTCCTGTGAGTCACACACTCTTCAATCCCACAGAAATTATAGAGAGGAACGGAGGGAAGCCACCACTTACTTATCAATCATTCACCAAAATTGCGGGGCAACCACCGCCACCTCTCACAATCACACACTCTTCMCTTCCTCCCATTGGTATTCTTGGGAGCTGTGATATTTCTGAGGTTCCTACAATRGAAGACCTTGGATATGGAGATGCTAAACAGGATGAATTCTCTCCTTTCAAAGGCGGTGAATCGGAAGCGTTGAAGAGGCTGGCAGAATGCATGAAAGACAAGGCATGGGTCGCAAKGTTTGAGAAACCAAAGGGTAATCCATCTGCATTTCTTAAGCCCGCAACAACTGTTTTATCACCTTACTTAAAATTTGGTTGTCTTTCCTCCAGATATTTCTACCGGCAGATTCAAGATGTCTATGAAACCATGCCGAAGCATACATCACCACCTGTGTCTCTTCTAGGACAGTTATTGTGGAGAGACTTCTTTTACACAGTAGCTTTTGGAACTCCAAACTTTGATAGGATGAAAGACAACAAGATATGCAAACAGATTCCTTGGAAGGATGATGATAAACTGTTAGAGGCTTGGAGGAATGGTCGCACAGGATTTCCATGGATTGATGCTATCATGGTCCAGCTACATCAATGGGGTTGGATGCATCATCTGGCACGTCATTGCGTTGCGTGTTTTCTAACTCGAGGTGATCTGTTTGTTCACTGGGAGAGAGGACGTGATGTCTTTGAGAGGCTTCTGATCGATGCAGATTGGGCTATTAATAATGGAAACTGGTTGTGGCTCTCATGTTCTTCCTTCTTTTATCAGTATAATCGTATTTACTCCCCGACATCCTTTGGTAAGAAGTATGACCCTAATGGTGACTACATTAGACACTTTCTCCCTGTCTTAAAAGATATGCCGAGGCAGTACATATATGAACCATGGAGTGCTCCTCTAAGCATTCAGACCAAAGCAAATTGRATTATTGGCAAAGACTACCCAAAGCCAGTTGTTTTGCATGATTCTGCAAGTAAAGAGTGCAAAAGGAAAATGGGCGAGGCGTATGCACTGAGCAAAGAACTGGATGGTGTTGTTAATGAAGATGATCTGAAAAACTTGAGAAGGAAACTAGATGAGGGTAAAGAACAAGAGACAAAAGCCAAGAGACCTAGAAACATATCTGGTTTAGCCTAG 1617 0.449 MLSGSGSSVMWFRKGLRIHDNPALQLASQGASHLYPLFVVDPHYMEPDPTSFSPGSSRAGLNRIKFLLESLVDLDLSLKNLGSRLLVLKGDPAEVLIRCLKEQWNVRKLCFEYDTEPYYQALDTKVKNFALGAGIEVFSPVSHTLFNPTEIIERNGGKPPLTYQSFTKIAGQPPPPLTITHSSLPPIGILGSCDISEVPTXEDLGYGDAKQDEFSPFKGGESEALKRLAECMKDKAWVAXFEKPKGNPSAFLKPATTVLSPYLKFGCLSSRYFYRQIQDVYETMPKHTSPPVSLLGQLLWRDFFYTVAFGTPNFDRMKDNKICKQIPWKDDDKLLEAWRNGRTGFPWIDAIMVQLHQWGWMHHLARHCVACFLTRGDLFVHWERGRDVFERLLIDADWAINNGNWLWLSCSSFFYQYNRIYSPTSFGKKYDPNGDYIRHFLPVLKDMPRQYIYEPWSAPLSIQTKANXIIGKDYPKPVVLHDSASKECKRKMGEAYALSKELDGVVNEDDLKNLRRKLDEGKEQETKAKRPRNISGLA* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0054 538 MobiDBLite consensus disorder prediction 513 538 - -
Amo09g0054 538 Pfam DNA photolyase 8 170 IPR006050 -
Amo09g0054 538 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 208 496 IPR036134 -
Amo09g0054 538 Pfam FAD binding domain of DNA photolyase 296 492 IPR005101 -
Amo09g0054 538 PANTHER CRYPTOCHROME 8 500 IPR002081 -
Amo09g0054 538 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 312 535 - -
Amo09g0054 538 MobiDBLite consensus disorder prediction 513 530 - -
Amo09g0054 538 Gene3D - 143 310 - -
Amo09g0054 538 PANTHER (6-4)-PHOTOLYASE, ISOFORM A 8 500 - -
Amo09g0054 538 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 185 IPR036155 -
Amo09g0054 538 Gene3D HUPs 5 142 IPR014729 -
Amo09g0054 538 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 6 145 IPR006050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0054 Amo-Chr9 614215 618994 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0054 K02295 - gmx:100780347 956.822
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0181 19 1981144 1982441 Amo09g0054 09 614215 618994 hybridization