Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2434 ATGGGAGAGAAAGAAAATAAATTAGAGAAAACAAGAGTAGCGGAAAAAGAGCAGCCAATAGAACCAAAAAAGGCAGAAACAATTGTAGTAGAAGATAAAGGAGTAGAAAAATTGATGGAAGAACCAAAATCCGAAGCCGCAGTTCTACCTGAAATTGTGCTAAGAGTGTTCATGCATTGTGAAGGTTGTGCCCGCAAGGTTCGTCGTTCACTGAAGGACTTTCCAGGGGTAAAAACAGTGATAACAGATACTAAGTCTCAGAAAGCAGTGGTGAAGGGAGAAATCACAGATCCACTTAAGATTGTGGAAAGAGTGCAGAAAAAGAGTCATAAGAAGGTGGAACTTCTATCTCCAATTCCAAAACAGTCTTCATCAGGGGATGAGAAAAAATCACCAATAGAAGAAGAGAAGACTAAGCAAAAGAAACAAGAGATTATAACTGTTGTTCTGAAAGTTCACATGCACTGCCAAGCTTGTTCACAAGAAATCAAGCGACGAATACTCAAAATGAAGGGAGTGGAATCAGCTGAAGCAAATCTAAAGAATTCATTAGTTAGTGTAAAAGGCGCCATTGACGCTTCGAAGCTTGTTGACTACGTGTACAAGAGAACAGCAAGATATGCAGTAATAATAAAGGTAGAACCACAGAAAACATCAAAGATTCAAGAAGAGAAACCAACAAATTCAGAAGAAGAAAGAGCAAAATTAAAGGAAGAAGAAAAGTCACAACAAGAACAAGTTGATAGCACTGAAAATAACAAGAAAGAAGAAGAAAAGAAGAATAAAAAAGAAGAGAAAGTAGCTGAAGAACAAATAAAACAAGAAGAGAAAGAAAAAGAGGATAATAATAATAATAATAATAATAATAATAGTAGCAAAGAAAAAGAGATTAGTTTGACTAAAAATGAATATTACTATTACCCACCAAGACATGAAATGGAGTTGTATGCATATGCCTACAATTATAATCTTCCACCACCTCCACCTATTTCTCTTCTTAATAATGCACACCCTCTTTATTATCAAAACTATCCTCCTCAGATGTTTAGTGATGAAAATCCAGATACATGTAATGTTATGTAA 1083 0.3509 MGEKENKLEKTRVAEKEQPIEPKKAETIVVEDKGVEKLMEEPKSEAAVLPEIVLRVFMHCEGCARKVRRSLKDFPGVKTVITDTKSQKAVVKGEITDPLKIVERVQKKSHKKVELLSPIPKQSSSGDEKKSPIEEEKTKQKKQEIITVVLKVHMHCQACSQEIKRRILKMKGVESAEANLKNSLVSVKGAIDASKLVDYVYKRTARYAVIIKVEPQKTSKIQEEKPTNSEEERAKLKEEEKSQQEQVDSTENNKKEEEKKNKKEEKVAEEQIKQEEKEKEDNNNNNNNNNSSKEKEISLTKNEYYYYPPRHEMELYAYAYNYNLPPPPPISLLNNAHPLYYQNYPPQMFSDENPDTCNVM* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2434 360 SUPERFAMILY HMA, heavy metal-associated domain 54 109 IPR036163 GO:0046872
Amo08g2434 360 ProSiteProfiles Heavy-metal-associated domain profile. 58 114 IPR006121 GO:0046872
Amo08g2434 360 MobiDBLite consensus disorder prediction 112 138 - -
Amo08g2434 360 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 1 360 - -
Amo08g2434 360 Gene3D - 142 211 - -
Amo08g2434 360 Gene3D - 49 113 - -
Amo08g2434 360 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 1 360 IPR044577 GO:0046872
Amo08g2434 360 SUPERFAMILY HMA, heavy metal-associated domain 147 202 IPR036163 GO:0046872
Amo08g2434 360 Coils Coil 233 289 - -
Amo08g2434 360 MobiDBLite consensus disorder prediction 218 283 - -
Amo08g2434 360 CDD HMA 58 114 IPR006121 GO:0046872
Amo08g2434 360 Pfam Heavy-metal-associated domain 150 197 IPR006121 GO:0046872
Amo08g2434 360 Pfam Heavy-metal-associated domain 53 109 IPR006121 GO:0046872
Amo08g2434 360 CDD HMA 149 198 IPR006121 GO:0046872
Amo08g2434 360 ProSiteProfiles Heavy-metal-associated domain profile. 154 200 IPR006121 GO:0046872
Amo08g2434 360 MobiDBLite consensus disorder prediction 218 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2434 Amo-Chr8 38079061 38080819 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2434 - - adu:107463469 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo03g2549 03 111046904 111048590 Amo08g2434 08 38079061 38080819 PCT
Amo08g2434 08 38079061 38080819 Amo03g2549 03 111046904 111048590 PCT