LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo03g2549	ATGTGTTTTTCTGGATCTGATTTTGTGTTGTGGCAGGAAGTGAAGAAGGTCGACGAGACTAAAGCAGAGGAACCAAAGAAGGAAGAAGGGGAGAAGAAGCCTGAGGAATCCAAGGATGGGAAGGTAGTGGAGGAAGCTGCAGCCCCAGCAGCACCCCCAGAGATTGTGCTTAAGGTGTTCATGCATTGCGAGGGTTGTGCACGCAAGGTTCGTCGCTCCCTTAGAGGATTCCCAGGGGTCGAGGATGTGATAACAGATTGTAAGAGTCACAAGGTGGTGGTTAAAGGAGAGAAAGCTGATCCTCTCAAGGTTAGGGAGAGAGTCCAGAGGAAGAGCCACAGACAAGTTGAGCTTCTCTCTCCCATTCCAGTTCCAGAACCAGAGGCGCCAAAAGAAGACAAGAAACCCGAAGAGCAAGAGAATCCTAAGCCCGAGGAGAAGAAAAAAGAGCCTGAGGTCATCAGAGTAGTTCTCCAAGCTCACATGCATTGTGAAGCATGTGCGCAGGAAATCAAGAGACGCATTGAGAGAATGAAGGGAGTTGAGTCAGCAGAACCGGATCTGAAGAACTCGCAAGTGAGCGTGAAGGGGGTGTTTGAAGTTGCAAACTTAGTGGACTACGTTTACAAGAGGACCGGGAAGCAAGTAGTGGTAGTGAAGCAAGAAACTGTAGAGAATAAAGAAGAATCCAATAAAGATGGTGGGAAAGAAGAGAAGAAGGGTGAGGAAGGTGATGGCGACAAAGACAAGAAGGAAGGCAGTCAAGTAGAAGAGAACAAAGAGAAGAAAGGAGAAGAAGAAGCAGCAGCAGCAGCAGCAGCTGAAGGAGGCACAGAAGAGAGCAACAAGGTGGTTGAACTGAAGAAGAATGAATATTACTACATGCCACCAAGGTATGGCTATGGTGGTGGCAACATGGAATACTATGCAGCTTATCCTGGTCCAGGTTACCCTCCTCAGATCTTCAGTGATGAGAACCCCAATGCATGTACTGTGATGTAA	1002	0.479	MCFSGSDFVLWQEVKKVDETKAEEPKKEEGEKKPEESKDGKVVEEAAAPAAPPEIVLKVFMHCEGCARKVRRSLRGFPGVEDVITDCKSHKVVVKGEKADPLKVRERVQRKSHRQVELLSPIPVPEPEAPKEDKKPEEQENPKPEEKKKEPEVIRVVLQAHMHCEACAQEIKRRIERMKGVESAEPDLKNSQVSVKGVFEVANLVDYVYKRTGKQVVVVKQETVENKEESNKDGGKEEKKGEEGDGDKDKKEGSQVEENKEKKGEEEAAAAAAAEGGTEESNKVVELKKNEYYYMPPRYGYGGGNMEYYAAYPGPGYPPQIFSDENPNACTVM*	334

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo03g2549	333	MobiDBLite	consensus disorder prediction	108	151	-	-
	Amo03g2549	333	MobiDBLite	consensus disorder prediction	224	269	-	-
	Amo03g2549	333	Gene3D	-	151	218	-	-
	Amo03g2549	333	SUPERFAMILY	HMA, heavy metal-associated domain	157	217	IPR036163	GO:0046872
	Amo03g2549	333	Pfam	Heavy-metal-associated domain	57	110	IPR006121	GO:0046872
	Amo03g2549	333	Pfam	Heavy-metal-associated domain	161	202	IPR006121	GO:0046872
	Amo03g2549	333	Gene3D	-	50	125	-	-
	Amo03g2549	333	ProSiteProfiles	Heavy-metal-associated domain profile.	162	195	IPR006121	GO:0046872
	Amo03g2549	333	ProSiteProfiles	Heavy-metal-associated domain profile.	61	117	IPR006121	GO:0046872
	Amo03g2549	333	MobiDBLite	consensus disorder prediction	19	47	-	-
	Amo03g2549	333	SUPERFAMILY	HMA, heavy metal-associated domain	56	111	IPR036163	GO:0046872
	Amo03g2549	333	MobiDBLite	consensus disorder prediction	19	43	-	-
	Amo03g2549	333	MobiDBLite	consensus disorder prediction	127	151	-	-
	Amo03g2549	333	CDD	HMA	61	117	IPR006121	GO:0046872
	Amo03g2549	333	MobiDBLite	consensus disorder prediction	224	282	-	-
	Amo03g2549	333	CDD	HMA	160	216	IPR006121	GO:0046872
	Amo03g2549	333	PANTHER	HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7	13	333	IPR044577	GO:0046872
	Amo03g2549	333	PANTHER	HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7	13	333	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo03g2549	Amo-Chr3	111046904	111048590	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo03g2549	-		-	adu:107480020	438.343

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo03g2549	03	111046904	111048590	Amo08g2434	08	38079061	38080819	PCT
	Amo08g2434	08	38079061	38080819	Amo03g2549	03	111046904	111048590	PCT