Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2246 ATGGCATTGACTGCAGCCGAGCTAGTCCACGCCGCAACAAGCGACAAGCTGACTGAAACTGATTGGACAAAAAATATTGAAATATGCGAATTAGTTGCTCAGGATCCAAGGCATGCTAGAGATGTTGTCAAATCTATCAAAAAGCGTTTGGGTAGCAAACACCACAATACTCAACTTTTTGCTGTCATGCTGCTGGAGATGTTGATGAACAATGTTGGAGAGCATATCCATGAGCAGGTTATTGATACCGGAATACTCCCTATTCTTGTGAAAATTGTGAAGAAAAAGTCAGATTTTCCTGTGAGGGAGCGGATATTTCTCCTACTCGATGCTACACAGACATCCCTTGGTGGTGCTTCCGGAAAGTTTCCGCAGTATTACAATGCATATTATGAGTTGGTGAGTGCCGGAGTACAATTTCCTCAAAGGGCTGAAGTGGTCCAATCAAATCATGCTAATTCACAACCGAATGGGACTAATAATGTACCGAACAGGGAGCAGGCCCCAACTAGACCTGAAAGTGTTCCTCCGAAGGATGCCGAGACTGTCCCTGAATCTAGCATCATTCAAAAGGCAAGTAATGCATTACAAGTTCTAAAAGAAGTCCTTGATGCAGTTGATGCTCAAAACCCTCAGGCAGCAAGGGATGAATTCACTCTTGACCTTGTCGAACAATGTTCGTTTCAGAAGCAAAGGGTAATGCATCTTGTCATGGCTTCTCGAGACGAGAGGATAGTTTCTCGGGCGATCGAATTGAATGAGCAGCTTCATAAAGTTCTAGCAAGACATGATGACCTCCTAGCTGGCAGAGTTACAACAACTGCTCCTCCTCGATTTGATCACGAAGACGAAGAAGCGGAGGAGGAAGAGGAGCCCGAACAGTTAGTCCGAAGATTACGCAAAGGAAAGGCTTGCGCGAGGCCTGAAGACGAAAAACAAAAAACCGAGATCCCAAGCTTGGGTTTGCTTGGGGAGAGACTCCACCGTCCGCTAATACGGCCACTCTCTTTGGAGCCATCTCGGGAGGCTAATACTCGTTCGCCACCTGCTTCAATGCTGCCGCCTCCACGTGCAAAACCGAATGGGGAGGTTCCTCATGTGACAATTCCGCCACCGCCGGCAAAGCACATTGAGAGGGAAAGATTCTTTCAGGAAAATAAGGATGGTTCTAATTTGTCTGGCCACATGAGAGGCCTCTCTTTACACAGTAGAAATGGTAGCAGCTCTCTCAGTGGAAGCTATGATCTTAGTGATTAA 1257 0.4638 MALTAAELVHAATSDKLTETDWTKNIEICELVAQDPRHARDVVKSIKKRLGSKHHNTQLFAVMLLEMLMNNVGEHIHEQVIDTGILPILVKIVKKKSDFPVRERIFLLLDATQTSLGGASGKFPQYYNAYYELVSAGVQFPQRAEVVQSNHANSQPNGTNNVPNREQAPTRPESVPPKDAETVPESSIIQKASNALQVLKEVLDAVDAQNPQAARDEFTLDLVEQCSFQKQRVMHLVMASRDERIVSRAIELNEQLHKVLARHDDLLAGRVTTTAPPRFDHEDEEAEEEEEPEQLVRRLRKGKACARPEDEKQKTEIPSLGLLGERLHRPLIRPLSLEPSREANTRSPPASMLPPPRAKPNGEVPHVTIPPPPAKHIERERFFQENKDGSNLSGHMRGLSLHSRNGSSSLSGSYDLSD* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2246 418 MobiDBLite consensus disorder prediction 146 168 - -
Amo08g2246 418 MobiDBLite consensus disorder prediction 333 418 - -
Amo08g2246 418 Pfam VHS domain 7 114 IPR002014 GO:0035091|GO:0043130
Amo08g2246 418 MobiDBLite consensus disorder prediction 271 295 - -
Amo08g2246 418 Pfam GAT domain 194 269 IPR004152 GO:0035091|GO:0043130
Amo08g2246 418 MobiDBLite consensus disorder prediction 303 322 - -
Amo08g2246 418 Gene3D - 184 275 IPR038425 -
Amo08g2246 418 SUPERFAMILY ENTH/VHS domain 7 142 IPR008942 -
Amo08g2246 418 MobiDBLite consensus disorder prediction 349 372 - -
Amo08g2246 418 SUPERFAMILY GAT-like domain 185 270 - -
Amo08g2246 418 MobiDBLite consensus disorder prediction 146 184 - -
Amo08g2246 418 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Amo08g2246 418 PANTHER ENTH/VHS/GAT FAMILY PROTEIN 6 418 - -
Amo08g2246 418 PANTHER TOM1-LIKE PROTEIN 6 418 IPR044836 GO:0035091|GO:0043130|GO:0043328
Amo08g2246 418 MobiDBLite consensus disorder prediction 387 418 - -
Amo08g2246 418 CDD VHS 5 133 - -
Amo08g2246 418 SMART VHS_2 5 137 IPR002014 GO:0035091|GO:0043130
Amo08g2246 418 Coils Coil 189 209 - -
Amo08g2246 418 Gene3D - 3 139 IPR008942 -
Amo08g2246 418 ProSiteProfiles VHS domain profile. 12 141 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2246 Amo-Chr8 35481215 35486076 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2246 - - gmx:100785131 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo03g2709 03 115719291 115723897 Amo08g2246 08 35481215 35486076 PCT
Amo08g2246 08 35481215 35486076 Amo03g2709 03 115719291 115723897 PCT