Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2709 ATGGCAGCTGAGCGAGTTAATGCTGCAACAAGTCAGAAACTGACTGAAACTGACTGGATGAAAAATATTGAAATCTGTGAATTAGTTGCTCATGATCAAAGGCAAGCTAGAGATGTTGTTAAGGCCATAAAAAAGAGACTAGGCAACAAGAACCCCAATACACAACTTTATGCAGTTATGTTGTTGGAAATGTTGATGAACAACATTGGAGATCCAATTCATAAACAGGTTGTTGAAACAGGAACCATTCCTATTCTTGTGAAAATTGTGAAGAAAAAGTCAGATTTGCCTGTAAGGGAACGGATATTTCTCCTGCTAGATGCTACACAAACAGCCCTTGGTGGTGCTTCTGGAAAGTTTCCACAATATTATAATGCATATTATGAGTTGGTGAGTGCTGGGGTGCAGTTTCCTCGAAGGGCTCAGGAATTCCAATCAAATTGTCCAAGTTCACAACCTAACAGGACTAATAATGGACCAAACAGGGAACAGGCCTTGCCTAGATCTGGTGGGGTTGCTCAGCAAGCGGAGTCCAATCCTTTTCCCGAATCTAGCATTATTCAGAAGGCTAGTAATGCATTAGAAGTTCTAAAAGAAGTCCTTGATGCTGTTGATGCGCAACATCCTCAGGGAGCAAGGGATGAATTCACCCTTGATCTTGTCGAGCAATGTTCGTTTCAAAAACAGAGAGTAATGCATCTTGTGATGGCTTCTCGTGATGAGAGGATTGTTTCACAAGCAATAGAATTAAACGAGCAGCTTCAGGAAGTTCTTGCAAGGCATGATGACCTCGTTTCTGGAAGAGCCACAACTCCCAATCACTTTGTCCATGAAGAAGTGGAAGAGGAGGAGGAACCTGAGCAGTTATTCCGAAGATTTATTTCTGCATGGCTAATGCCTTGCAGATTACGCAAAGGAAAGGCTTGTGCAAGGCCTGAAGATGAAGAGACTGAGCCTCGTTTCCCTAACTGGGGTTTGCTTGAAGAGAGACTCAACCGTGCACTAATAAGACCGCTCTCTTTGGAGCCATCTCGACAAACCAATACCCGTGCTGCACCTGTAGTGGTTCCACCTCCAAATGCAAGGAACAATGGTGAGCTTCCTCATGTAGCAATTCCACCACCACCTTCGAAGCACTTTGAAAGGGAGAGATATTTTCAGGAGAACAAGAAGGATGGTGCTACTTTGGCCAGTCACTTGAGGGGCCTCTCCTTGCATAGTTACAATGGCAGCAGCTCTCACAGTGGAAGTTTTGATTCTAGTGATTAA 1269 0.4381 MAAERVNAATSQKLTETDWMKNIEICELVAHDQRQARDVVKAIKKRLGNKNPNTQLYAVMLLEMLMNNIGDPIHKQVVETGTIPILVKIVKKKSDLPVRERIFLLLDATQTALGGASGKFPQYYNAYYELVSAGVQFPRRAQEFQSNCPSSQPNRTNNGPNREQALPRSGGVAQQAESNPFPESSIIQKASNALEVLKEVLDAVDAQHPQGARDEFTLDLVEQCSFQKQRVMHLVMASRDERIVSQAIELNEQLQEVLARHDDLVSGRATTPNHFVHEEVEEEEEPEQLFRRFISAWLMPCRLRKGKACARPEDEETEPRFPNWGLLEERLNRALIRPLSLEPSRQTNTRAAPVVVPPPNARNNGELPHVAIPPPPSKHFERERYFQENKKDGATLASHLRGLSLHSYNGSSSHSGSFDSSD* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2709 422 Gene3D - 2 136 IPR008942 -
Amo03g2709 422 Gene3D - 183 272 IPR038425 -
Amo03g2709 422 MobiDBLite consensus disorder prediction 142 164 - -
Amo03g2709 422 MobiDBLite consensus disorder prediction 345 393 - -
Amo03g2709 422 Pfam VHS domain 5 112 IPR002014 GO:0035091|GO:0043130
Amo03g2709 422 SUPERFAMILY GAT-like domain 144 268 - -
Amo03g2709 422 Coils Coil 187 207 - -
Amo03g2709 422 MobiDBLite consensus disorder prediction 142 182 - -
Amo03g2709 422 CDD VHS 2 130 - -
Amo03g2709 422 Pfam GAT domain 192 267 IPR004152 GO:0035091|GO:0043130
Amo03g2709 422 SUPERFAMILY ENTH/VHS domain 4 139 IPR008942 -
Amo03g2709 422 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Amo03g2709 422 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Amo03g2709 422 CDD GAT_GGA_like_plant 186 264 - -
Amo03g2709 422 MobiDBLite consensus disorder prediction 376 390 - -
Amo03g2709 422 PANTHER ENTH/VHS/GAT FAMILY PROTEIN 1 422 - -
Amo03g2709 422 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Amo03g2709 422 PANTHER TOM1-LIKE PROTEIN 1 422 IPR044836 GO:0035091|GO:0043130|GO:0043328
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2709 Amo-Chr3 115719291 115723897 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2709 - - gmx:100802949 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo03g2709 03 115719291 115723897 Amo08g2246 08 35481215 35486076 PCT
Amo08g2246 08 35481215 35486076 Amo03g2709 03 115719291 115723897 PCT