Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1403 ATGCGCCATTCATATTTCTCCTACGTTAGAAATGTAACCCGATTCCGTTCACGTTCACGTTCTGCTGCATACTCTTCCTTCTTTTCGGAATTCGATGGAGATTCTACACTCGCAAGCCTCAAGCTTAAACAATCCCCTGCTTCAGATGATTCTTCTAATGTGGCGTTTAAGAAAATTTCTTCTATTTACTACGGTGATAGTATCTCGGTCAAGAAACCCATATCTAAGAGAAATGATAATACAAAAGAGTCCCAAAGTCAGCCAGGGATATCATGGCTTTCAAACATATATAACAATAATTTATTATTACAACGGAAAGGACATTCTCGCAAAAAGAAACAGAAACACTTGTTTGAATTTTCTCAAGAGAACCGTTTTAATAAGTTGGTTAGAATTTGTGCAAAGGTACTTGGACCGGAGGCTACCATTGCATTGTTTGGTAAAGTTGGACGAGATCCAGGGATCAAAGGGTACAATGCACTGATAGAAATGTGCATAGAAAAGGCTAGGGAAAGTAGTGACGAAGACATAGTGATAGAAGAGTTGGGGAAGGTTTTCCATCTTTTTAAATTGATGGGTGAACGAGGATTTCGGCTAGAAGAGCAATCATATCGTCCACTTCTTTTGTATACTATTGACATGTGTATGGTTGAAGAGTTTCATTTTTTCTGTGATGCTATCAAAGACCAGAATGCCAGTTTAATTACCAGACTCGGTTACTACGAAATGATGTTGTGGTTAAGAGTTAATAATGAAGAAAAGATTCAAGAAATCTGTAATCTCATTGCAGAGAATGATGGTGAAGAAACTTCTGATTTACGAGAAAATTATTTCTTGGCTCTTTGTGAGAGTGAGCGGAAGAAGGAGATATTGGAGCTATTGGAAATCATAGACATAAAAAAGCTTTCATCTGTAGAATCTGTAGAAAAGATATTTCAGGCATTAGGAAGGCATCAACTGGAACCTGTTGCGGAGAACTTCCTTTTGGACTTCAAAACAAGTGATTATGAAACAAATAATATTACAAACTTCATTGCAAGTTATGCTGTTAGCATCCCAGATTTATTGGTTGAGAATGTCATTACAAAATTCAAGGATTTGCACCAAACACTTGAAGTGTCACCTTCATCCTCATCATATGAGAAGCTAATTTTACATTGCTGCACGTTGCGCGAGGTGCGTGTAGCTCTTGATATTGTTGGTGAAATGTGTGAAGGGGGCTTGACTTTATCAAATGAGATGTTACAGTCCATATTACAAACTTGTGAGGAAACATCCGAATATAATTTGGTTCATCGGATCTTCTCTACAATACGCCAGTACAATCTGGAGACAAATGATAAGACATTCAGATGTATGATAGACTTGTTCTTGAAGATGAAAGACCTTGAAGGTGCATATAGAATGCTCGATGAAATGGGGGAACTGAATTTGAAACCATCAGCTAGCATGTACAATACCATAATGGCAGAATGTTTTAGAGAGAAAAACACGAGTGATGGGGTCAGGGTCCTTGAGCACATGCAGAATGCTGATGTAATGCCTGATTCAGAGACTTTTAGCTACCTGATTAGCAACTCTGAAACTGAAGAGGATATAGTCATGCCACAACTTGTTGGGCCTTTCCACTCTCCCACAAACCTTCGCATTTCATTTGTCTTCTCTTTCACTAACCACCAAAAGGATTCACGCTTTCTTTTGTATTGTTCTCCACTTCTCCGTCACTGTATAAACATTTACACACACTATGAACTGCTTTCTGAAATCAAGGATAAGCTAGGCCTTGTGCCTCCAAAGGAATATCATGATTCTCTGCTAAGTGCTCATGCCAAAACCTCTGAATTACATAATGCTAACAGCACAAAACATTGA 1872 0.383 MRHSYFSYVRNVTRFRSRSRSAAYSSFFSEFDGDSTLASLKLKQSPASDDSSNVAFKKISSIYYGDSISVKKPISKRNDNTKESQSQPGISWLSNIYNNNLLLQRKGHSRKKKQKHLFEFSQENRFNKLVRICAKVLGPEATIALFGKVGRDPGIKGYNALIEMCIEKARESSDEDIVIEELGKVFHLFKLMGERGFRLEEQSYRPLLLYTIDMCMVEEFHFFCDAIKDQNASLITRLGYYEMMLWLRVNNEEKIQEICNLIAENDGEETSDLRENYFLALCESERKKEILELLEIIDIKKLSSVESVEKIFQALGRHQLEPVAENFLLDFKTSDYETNNITNFIASYAVSIPDLLVENVITKFKDLHQTLEVSPSSSSYEKLILHCCTLREVRVALDIVGEMCEGGLTLSNEMLQSILQTCEETSEYNLVHRIFSTIRQYNLETNDKTFRCMIDLFLKMKDLEGAYRMLDEMGELNLKPSASMYNTIMAECFREKNTSDGVRVLEHMQNADVMPDSETFSYLISNSETEEDIVMPQLVGPFHSPTNLRISFVFSFTNHQKDSRFLLYCSPLLRHCINIYTHYELLSEIKDKLGLVPPKEYHDSLLSAHAKTSELHNANSTKH* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1403 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 480 IPR002885 -
Amo08g1403 623 TIGRFAM PPR: pentatricopeptide repeat domain 484 516 IPR002885 -
Amo08g1403 623 TIGRFAM PPR: pentatricopeptide repeat domain 449 481 IPR002885 -
Amo08g1403 623 Gene3D Tetratricopeptide repeat domain 377 535 IPR011990 GO:0005515
Amo08g1403 623 PANTHER OS02G0132600 PROTEIN 71 534 - -
Amo08g1403 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Amo08g1403 623 Pfam Pentacotripeptide-repeat region of PRORP 377 524 IPR033443 -
Amo08g1403 623 PANTHER OS02G0132600 PROTEIN 71 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1403 Amo-Chr8 22879692 22888802 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1403 364 546 Glycosyltransferase AT1G05670 20.745 4.05e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1403 - - ahf:112773224 999.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g1403 08 22879692 22888802 Amo03g0353 03 6513214 6522888 PCT
Amo03g0353 03 6513214 6522888 Amo08g1403 08 22879692 22888802 PCT