Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0353 ATGTATTGCTGTGATATAGGCAAGGTTGATGTTGCACTTGATCTTGTTGATAATATGTGTGAAGCAGGCTTTACATTGTCAACTAGGATGTTACAGTCCATATTACACATTTGTGAGGAAACCTATGAACATATTTTGGTTTACCGGATCTATTCCATCATACAGCGGTTCCATTTGAAGTTGAATGGTGAAATATGTAGGTGTTTGGTAAATTTTTGCGTGAGGGTGAAAGATTTTAAAGGTGCATACAAGATGGTTGATGACTTGGAGAAAATGAATTTCAAACCTAKTACCGCCATGTACAATGCTATAATGGCAGGATATTTTCGAGAGAAAAATATCAGTGGTGCTRTGAGGGTCCTCAAGCACATGCAGGATGCCAATGTTAATCCTGATGTACAGACTTTCAGCTATTTGATTAGTAATTGTGAAACAGAAGAGGATATAATCAAGTATCGTGAAGAAATGGAGCAATATAAAATCCCACTTGCAAAACCGATTTTTATGGCCCTTATTAATTCATATGCAGCTTGTGGCAAATTGGATATGGCAAAACAGGTCATTTTGGATCCGAACATACCAGCAAAAAGCTTAAATGAAATCAAGAGCGTCCTTGTCTCAGCTCTTGCATCACATGGGCAGTTGTCCGAGGCACTRTTAGTATATGAGGAGATTAATAAAGCTGGATACAATTTGGAACCAAAAGCTGTTATAAGTCTTATCGAAGAGTTCACCAAATTCAAAGGAGAGTTGGATGGGATGCTTATGCTACTTACAGAATTGAGTGATCTAGACTATTGGGTCGARGGCTGCTTCAGAGTTATCATATATTGTGTTCACAACAAGCATCTAAGTTCTGCTATTGACTTGTTCAAGAAACTCAAGGATAAGTTTGAAAGTGATGAACTAGTATTGGAAGTTCTCTTTGATGAAGTGTTTGCTGCAATTGCAACATCCGAGTCCTCAAATTTGCAGATTGGTTTAGARTTGCTTTGGGCAGTCAAGAACGAGCTTGGTCTCGTGCCTTCACGGCAATGTCTTGATTTTCTTCTAAGTGCCTGCACCAATGCTGGAGATTTGAGTAATGCTCGTTTGATTTGGAGAGAATATGAGGTTGCTGGATTTCCATACAACGTGCTAAGTTATTTGAGGATGTATCAAGCACTTTTGGCATCGGGAGATTATAGATCTGCTAACTTTATGCTAAGTAAAATTCCGAAAGATGACAGCGAGGTATCTGCTATCATCAAAGCCTGTCAAGAAACATACTCTGGTCTTTCCTCTGTGGCAAAGAAGAAAACGAAAGTAACAAAAAAAGAAAGAAAAACGAGAGGCTTGAGTTCTCTTTCTAAGATAATTTTTATGTATTGGTTAAGAAATGCTCGTCAGAAGGGTGGTGCATTTCTTGTTAATTTAGTTACGTCAAATCATGCTGATATTGTCCATGCTTAG 1452 0.3802 MYCCDIGKVDVALDLVDNMCEAGFTLSTRMLQSILHICEETYEHILVYRIYSIIQRFHLKLNGEICRCLVNFCVRVKDFKGAYKMVDDLEKMNFKPXTAMYNAIMAGYFREKNISGAXRVLKHMQDANVNPDVQTFSYLISNCETEEDIIKYREEMEQYKIPLAKPIFMALINSYAACGKLDMAKQVILDPNIPAKSLNEIKSVLVSALASHGQLSEALLVYEEINKAGYNLEPKAVISLIEEFTKFKGELDGMLMLLTELSDLDYWVEGCFRVIIYCVHNKHLSSAIDLFKKLKDKFESDELVLEVLFDEVFAAIATSESSNLQIGLELLWAVKNELGLVPSRQCLDFLLSACTNAGDLSNARLIWREYEVAGFPYNVLSYLRMYQALLASGDYRSANFMLSKIPKDDSEVSAIIKACQETYSGLSSVAKKKTKVTKKERKTRGLSSLSKIIFMYWLRNARQKGGAFLVNLVTSNHADIVHA* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0353 483 Gene3D Tetratricopeptide repeat domain 272 464 IPR011990 GO:0005515
Amo03g0353 483 Pfam Pentacotripeptide-repeat region of PRORP 3 141 IPR033443 -
Amo03g0353 483 PANTHER OS02G0132600 PROTEIN 2 439 - -
Amo03g0353 483 Gene3D Tetratricopeptide repeat domain 149 271 IPR011990 GO:0005515
Amo03g0353 483 Pfam PPR repeat 168 188 IPR002885 -
Amo03g0353 483 Pfam PPR repeat 204 229 IPR002885 -
Amo03g0353 483 PANTHER OS02G0132600 PROTEIN 2 439 - -
Amo03g0353 483 Gene3D Tetratricopeptide repeat domain 43 148 IPR011990 GO:0005515
Amo03g0353 483 TIGRFAM PPR: pentatricopeptide repeat domain 100 133 IPR002885 -
Amo03g0353 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0353 Amo-Chr3 6513214 6522888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0353 2 408 Glycosyltransferase AT1G05670 19.957 7.45e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0353 - - ahf:112737814 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g1403 08 22879692 22888802 Amo03g0353 03 6513214 6522888 PCT
Amo03g0353 03 6513214 6522888 Amo08g1403 08 22879692 22888802 PCT