Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2961 ATGAAGGTTAAGGTGAAGAACCCTTCACTGAGGAGGTTGATTAGTGGTGCATTCGCGGGTGCAATTTCGCGAACTTGCGTGGCGCCATTGGAGACAATAAGAACTCATTTGATGGTTGGGAGTAGTGGCCATTCAACAGGTGAGGTGTTTCAGAATATCATGAAGACTGATGGCTGGAAGGGATTGTTCAGGGGTAATTTTGTCAATGTCATCAGGGTTGCTCCTAGCAAGGCTATTGAGCTATTTGCTTATGACACAGTTAACAAGAATCTGTCACCAAAGCCTGGGGAGCAGGCCATGCTTCCTATTCCTGCGTCATTGATTGCAGGTGCCTGTGCCGGAGTTAGTTCAACTATATGCACATATCCTCTAGAGTTGGTCAAAACTCGACTGACCATCCAGAGAGGTGTTTATAATGGTTTAGTTGATGCATTCTTGAAAATAATTCAACAAGAAGGTCCTGGTGAACTTTATCGAGGACTCGCCCCAAGTCTTATTGGTGTAATTCCATATTCTGCCACCAACTACTTTGCATACGACACATTAAGAAAAGCATACAAGAAAATCTTCAAACAAGACAAGATTGGAAACATTGAAACGCTCTTGATAGGATCCGCTGCTGGTGCCATATCGAGTAGTGCAACTTTTCCACTCGAAGTGGCTCGCAAGCATATGCAAGTGGGGGCACTCAGTGGAAGGCAAGTTTACAAGAATGTTGTTCATGCCCTTGCAAGCATACTTGAACAAGAAGGTATTCAAGGATTGTATCGAGGGTTGGGACCTAGCTGCATGAAGTTGGTGCCAGCTGCAGGTATCTCTTTCATGTGCTATGAAGCTTGCAAAAGGATACTAGTAGAGGATGATGATGAAGAATAG 876 0.4429 MKVKVKNPSLRRLISGAFAGAISRTCVAPLETIRTHLMVGSSGHSTGEVFQNIMKTDGWKGLFRGNFVNVIRVAPSKAIELFAYDTVNKNLSPKPGEQAMLPIPASLIAGACAGVSSTICTYPLELVKTRLTIQRGVYNGLVDAFLKIIQQEGPGELYRGLAPSLIGVIPYSATNYFAYDTLRKAYKKIFKQDKIGNIETLLIGSAAGAISSSATFPLEVARKHMQVGALSGRQVYKNVVHALASILEQEGIQGLYRGLGPSCMKLVPAAGISFMCYEACKRILVEDDDEE* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2961 291 PRINTS Mitochondrial carrier protein signature 158 176 IPR002067 GO:0055085
Amo06g2961 291 PRINTS Mitochondrial carrier protein signature 25 39 IPR002067 GO:0055085
Amo06g2961 291 PRINTS Mitochondrial carrier protein signature 65 85 IPR002067 GO:0055085
Amo06g2961 291 PRINTS Mitochondrial carrier protein signature 116 134 IPR002067 GO:0055085
Amo06g2961 291 PRINTS Mitochondrial carrier protein signature 12 25 IPR002067 GO:0055085
Amo06g2961 291 PRINTS Mitochondrial carrier protein signature 204 226 IPR002067 GO:0055085
Amo06g2961 291 PANTHER ADENINE NUCLEOTIDE TRANSPORTER BT1, CHLOROPLASTIC/MITOCHONDRIAL 1 290 - -
Amo06g2961 291 SUPERFAMILY Mitochondrial carrier 8 279 IPR023395 -
Amo06g2961 291 ProSiteProfiles Solute carrier (Solcar) repeat profile. 101 185 IPR018108 -
Amo06g2961 291 Pfam Mitochondrial carrier protein 8 91 IPR018108 -
Amo06g2961 291 Pfam Mitochondrial carrier protein 195 286 IPR018108 -
Amo06g2961 291 Pfam Mitochondrial carrier protein 102 188 IPR018108 -
Amo06g2961 291 ProSiteProfiles Solute carrier (Solcar) repeat profile. 7 90 IPR018108 -
Amo06g2961 291 Gene3D Mitochondrial carrier domain 3 289 IPR023395 -
Amo06g2961 291 ProSiteProfiles Solute carrier (Solcar) repeat profile. 195 283 IPR018108 -
Amo06g2961 291 PANTHER SOLUTE CARRIER FAMILY 25 1 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2961 Amo-Chr6 95721829 95724472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2961 194 291 Organic Solute Cotransporters AT4G32400 32.000 2.30e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2961 K14684 - pop:7471586 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g2961 06 95721829 95724472 Amo08g2087 08 33643724 33647244 PCT
Amo08g2087 08 33643724 33647244 Amo06g2961 06 95721829 95724472 PCT