Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2424 ATGTCGTGTTTGTCAGCAAGAACAGGACGACAAAGACAGCGTTATGAAGGAAATTTGCGCCTTGTCTCCGGGTGTATTCCCTATAGGTGGATAAAGGACAGCACAGATCAAACGGGCGAAACAGAGGAAATGATAGAAGTACTCATGGTTTCTTCGCCGAAACGCGATGATCTTGTATTTCCAAAGGTACTTGATAATGAATTAGATATTATCTATGTCTGCAACAATTCCCTTCATCAGCACTTGATCACTTTCCAGGGTGGATGGGAGGATGATGAAACTGTTACGGAAGCCGCGTGCCGCGAAGCATTAGAGGAAGCAGGAGTTAAAGGACTTCTAAGAGAAGTTCCACTGGGAATATGGGAATTCAGAAGCAAAAGCAACCTTGACTTATGTTGCACGGAAGGTGGTTGTAAAGGATACATGTTTGCCATGGAGGTTACCGAAGAACTTCACACTTGGCCGGAGCAAAATAACCGCAGTCGCCAATGGTTAAACATAAAGCAGGCATTTAGTCTGAGCCGGTACGAGTGGATGTGTAGCGCGCTCGAGGAGTTTCTTAGAGTCATAGAAGAAGAAAGAAAGCTTGAGAAGCAAGATGAAGATAGCATTGGTTGCCCTTCAAGTCTAGTAGCAGATGTTTCAGAATCTCAAACTATGGCACCGCCTAAGTGCTATAAAAGATCCTCTACTATGCCACACCATAGTATGAATTCTAAGAAAAACATCTTATCATGTGCTTCTTAA 747 0.4351 MSCLSARTGRQRQRYEGNLRLVSGCIPYRWIKDSTDQTGETEEMIEVLMVSSPKRDDLVFPKVLDNELDIIYVCNNSLHQHLITFQGGWEDDETVTEAACREALEEAGVKGLLREVPLGIWEFRSKSNLDLCCTEGGCKGYMFAMEVTEELHTWPEQNNRSRQWLNIKQAFSLSRYEWMCSALEEFLRVIEEERKLEKQDEDSIGCPSSLVADVSESQTMAPPKCYKRSSTMPHHSMNSKKNILSCAS* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2424 248 ProSitePatterns Nudix box signature. 87 108 IPR020084 GO:0016787
Amo06g2424 248 ProSiteProfiles Nudix hydrolase domain profile. 18 187 IPR000086 -
Amo06g2424 248 MobiDBLite consensus disorder prediction 231 248 - -
Amo06g2424 248 PANTHER NUDIX HYDROLASE 12, MITOCHONDRIAL 1 62 - -
Amo06g2424 248 PANTHER NUDIX HYDROLASE 12, MITOCHONDRIAL 65 212 - -
Amo06g2424 248 MobiDBLite consensus disorder prediction 221 248 - -
Amo06g2424 248 CDD Nudix_Hydrolase_9 21 179 - -
Amo06g2424 248 Pfam NUDIX domain 79 175 IPR000086 -
Amo06g2424 248 SUPERFAMILY Nudix 65 188 IPR015797 -
Amo06g2424 248 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 1 62 - -
Amo06g2424 248 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 65 212 - -
Amo06g2424 248 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 4 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2424 Amo-Chr6 85537434 85541696 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2424 K07766 - gmx:100794003 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3051 16 132525620 132529753 Amo06g2424 06 85537434 85541696 hybridization