Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0411 ATGGTGCGGATTATTCCCTTGCCCACCAACGCTATCACCGGAAAGCCTTCACCTTTGGAAACTTTTGTGGCCATACTCGTTCTCTGCATTCTGGGTTTCTATACCCTGTATTACCCTTACCCTGTTTCAACTTCAACCGCCATTGATCTCTTTCTCTCATCTGCTTCCAACTCCACCATCTCCTCCTACCTTCGCAGCCTCACCCTCCACCCTCACCTCGCCGGAACAAAGCTCGCCGCCGATACCACACGCCTCGTCATAAACCACTTCAGGTCCCTTAACCTTCCAACGCACACAACAACCTACACCACACTCCTCTCTTACCCTCTTCACTCCTCTGTTTCATTGCATTTCCCAAACGGTTCAGTTCTCAACCTTCCACTCACCGAACCCGTTCATTTCAGCGACCAGACCGGACAACCAGTGGTGCAACCTTACCACGCTTACTCGCCGTCCGGTTCGGCTTATGCGAGGGCGGTTTTCGTGAACTACGGCAGGGAGAGGGACTACCGTGCGCTTCGGGCGCAGGGGGTGCACGTTAGCGGCTGCGTCGTTGTGGTTCGTAAAGGCGGCGGGTTAGGGAGGGGAGCGGTGGTTGAGAAAGCTGAAGAGAATGGCGCGGTGGCAGTGCTGGTTTACGGGGACGGTGACACGTGGCGTGATGGGTTCGAGAGAGGTCACGTGATGAGGGGTGTGGGGGACCCTTTGAGTCCTGGTTGGGCTGGTGTTGATGGCGGTGAAACCTTGGGTTTGGATGATAGTGAGGTTTCGAAGAGGTTCCCCAAAATTCCATCTTTACCCTTGTCTGCTGAGGTTGCTGAGARTGTTTTGGGWTCCTTGGGTGGTGCMCCGGTGCCCCTTGAATGGAGGGGTACCCTAGGATCTAAGGTCAGGCACGTTGGTCCTGGTCCCACCATGCTCAATTTCTCTTACCAGGGAGAGAAGAAAGTGGCAACTATTCAGAATGTGTTTGCTGTGATAAAGGGTTATGAGAAACCTGATAGGTATGTGTTGCTTGGGAACCATAGAGATGCATGGACTTTTGGTGCTGTTGATCCCAGCAGTGGGACAGCTGCCCTGCTCGACATTGCCCAGAGATTTTCAATTCTGTTAGGTTCCGGTTGGACTCCGAGGAGATCTATCATTCTCTGCAGCTGGGATGCTGAGGAATTCGGAATGATAGGATCCACTGAGTGGGTTGAACAAAACCTTATCAATCTGAGTCCCAAAGCTGTGGCATACCTTAATGTGGACTGTGCTGTTCAAGGGCCTGGCCTCTTTGTTGGCTCAACTCCTCAGCTAGACAATCTTATTGTGGAGGTCACAAAGAAGGTCAAGGATCCTGATTCTGAGGGTGCATCAATATATGAGAACTGGGCTGTCACTGGTGAAGACTACAATATTCAAAGGCTCAGTGCAGTTGATTCTGATTTTGCTCCATTTGTGCAACATGCAGGGGTTCCATCTATTGATGTTTATTATGGAAGAGATTTTCCTGTCTATCACACGGCTTACGACTCGTATAACTGGATGACAGAGTATGGAGATCCATTTTTTCAGCGACACGTTGCCGTTACTGGAATTTGGGGACTCCTAGCCCTTCACCTGGCCGACGATTCCATTCTTCCCTTCAATTACGTTTCCTATGCGAATCAATTATTGTCTTACAAGAACAAGTTGAGCAACTTGTTAGATCAGCAAGTTTCTCTACATCCATTAACCATGTCAATTCAAGAATTTGCTTCTGCAGCCAAGCAAGTTGATGATGAATCAAAGGTAAACCAAACAATGCTTGCAAATGATGTATCTTTTAGTGCTAGAATCCCTTTTTTTTCTTCTTATTCCATTTCAATTCCAATTTATACTCATCTTTGTTCTGAATTGCAGCAACTGAGATTGCAAGAAACTGCAGGTGATATAGTAGATATGAAGAAGCGAGCGTTGAACGACAGACTAATCCTTGCTGAAAAAGGCTTCCTTGATGCAGATGGTCTTCATGGAAGGCAGTGGTTCAAGCATCTTGTGTTTGGGCCTCCAAGGGACCAAGAAAACAAGCTAGATTTCTTCCCTGGGATTGCTGATTCAATAACACAGGGATCATCAAAGGCAACAAGTGAAAGAGAAAGGGTAGCAGCAATTCAACATGAAATCTGGAGAGTTGCAAGAGCCATTCAAACAGCTGCTTCTGCACTCAAAGGAGAATTCACCTAA 2211 0.4803 MVRIIPLPTNAITGKPSPLETFVAILVLCILGFYTLYYPYPVSTSTAIDLFLSSASNSTISSYLRSLTLHPHLAGTKLAADTTRLVINHFRSLNLPTHTTTYTTLLSYPLHSSVSLHFPNGSVLNLPLTEPVHFSDQTGQPVVQPYHAYSPSGSAYARAVFVNYGRERDYRALRAQGVHVSGCVVVVRKGGGLGRGAVVEKAEENGAVAVLVYGDGDTWRDGFERGHVMRGVGDPLSPGWAGVDGGETLGLDDSEVSKRFPKIPSLPLSAEVAEXVLGSLGGAPVPLEWRGTLGSKVRHVGPGPTMLNFSYQGEKKVATIQNVFAVIKGYEKPDRYVLLGNHRDAWTFGAVDPSSGTAALLDIAQRFSILLGSGWTPRRSIILCSWDAEEFGMIGSTEWVEQNLINLSPKAVAYLNVDCAVQGPGLFVGSTPQLDNLIVEVTKKVKDPDSEGASIYENWAVTGEDYNIQRLSAVDSDFAPFVQHAGVPSIDVYYGRDFPVYHTAYDSYNWMTEYGDPFFQRHVAVTGIWGLLALHLADDSILPFNYVSYANQLLSYKNKLSNLLDQQVSLHPLTMSIQEFASAAKQVDDESKVNQTMLANDVSFSARIPFFSSYSISIPIYTHLCSELQQLRLQETAGDIVDMKKRALNDRLILAEKGFLDADGLHGRQWFKHLVFGPPRDQENKLDFFPGIADSITQGSSKATSERERVAAIQHEIWRVARAIQTAASALKGEFT* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0411 736 Pfam Peptidase family M28 322 509 IPR007484 -
Amo06g0411 736 Gene3D Zn peptidases 58 543 - -
Amo06g0411 736 Gene3D - 112 313 - -
Amo06g0411 736 Gene3D - 544 733 IPR036757 -
Amo06g0411 736 CDD M28_PSMA_like 318 544 - -
Amo06g0411 736 SUPERFAMILY Zn-dependent exopeptidases 56 541 - -
Amo06g0411 736 PANTHER N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE 37 736 IPR039373 -
Amo06g0411 736 SUPERFAMILY PA domain 105 324 IPR046450 -
Amo06g0411 736 SUPERFAMILY Transferrin receptor-like dimerisation domain 543 734 IPR036757 -
Amo06g0411 736 Pfam Transferrin receptor-like dimerisation domain 568 732 IPR007365 -
Amo06g0411 736 PANTHER F10A2.10 PROTEIN-RELATED 37 736 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0411 Amo-Chr6 5527989 5531970 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0411 K01301 - gmx:100818733 1027.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4065 16 153123386 153127566 Amo06g0411 06 5527989 5531970 hybridization