Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0402 ATGAATCCGCCCACGATAGACTTCAAGGTGGATCTCAATTCAGAGAGGGTTGAAGAAGAGAAAATGGAAGGGGGTTCTATGCTTTATTGTGATCTTTGTGATACAGAAGTAGTTTACAAGTTGGCGCAAATGTTGCTTCCAGGGCTAGCAACTTCCTGTGTTGATAGCACAGCTGGGAGCTTCAAGACTCCTGGTTCAGTGGCTGTTGATTTGAGAAAGGAAATGATAATCTATATTACGCAGAGAAGCGAAACGTTTGTCGCTGAGTCTATTGTCTTGGATGGTGGTCCTAATGGTGAAGAATCGGATCATCCTTTTGATATCATTTCTAACTTTGTTGATGACTTTGCTATTTCAAAGAGGAATTTATTTACCCGGGTTTCTGGATTGCTACTCACTGATATGAGAGAAGACAAGATTGATGATTTCATGCAGGAGATGGAACTGACTGGTTTTTGGCCACTGGAAAGAAGAGAAACGATTGCAGAGGCGATTCTAAAGAATGTTGACATCAAGAATGAATTTCATTGTGCTATGAAGTTCAGATCTGTAGATGATCTTGCTGTTCATGCTTTCCATTGTAACTTCAGACCTCTATTCTGCGAAAATGAGGGATGCAATGCAAGGTTAATTGCAAAACATTTGGAAAAGCATGACTCAATTTGTCCTTTCAAAATAATTCCATGTGAGCAGAAGTGTTCAGATAGCATTATGAGGCGTGCAATGGACAGACACTGTATCACTGTTTGTCCCATGAAGCTTGTAGATTGTCCATTTCATTCGTTAGGTTGTCGATCTGCTATAGCACAATGTGTGATCGAAAAGCACTGCGCAGATGATGTTCGTTCTCACTTGTGGCACTTGCTTAAAGGCATGTACAAGCAAGCATCTGGGGAAGATCTTCAAAGACGGGTACAGCAAATTGTACAGGCATCACCAGGCAGCAGGTTAGCAGAGGCCCGGGATGTGAGATCTCTAAACTTTGTTGTCAAGGATATTGAAGCTAAGCTAGGGCCTTTTGAGTTGGGTTCTGCGAAAAAAAATAGCACAGAGACTCTCACCAAAAACAATGGTGGGAAAAATGTTGCCACCAATGCAAACGGCAGTGAAGAAAGCTCAAAGACTCCAGATTTGATAAATTCATCACATCAAGCTGAAGTCAGTGCTGAGAAGAAAAATAGTGTAGAGACTATCGCTAATAACAACAATGGGGGAAATAGTGTTGCCAATGCAAAGGGCAGTGGAGAGAGCACAAAGGCTCCAGATATGGGAAATTCATCCAATAAAGCTGAACGGAGTTTTGAGAAGAAAAATATCGCAGAGACTGTTGCCGAATACGACGATGGGAGAAGTAGTGTTACCAATACAAATGGCAGTGAAGAGAGCACAAATGCTCTACATATGGTAAATTTATATACAACTGAAGTGAGTGCTGATAAAAAAGATAGCTTAGATATTACAACCAATGAGAAGGGCAGTGAAGAGAGCACAGAGGCTTTAGATATGGTAGATTTACTAGAAAAAGTTGAAGCGCGCGGTATCATCCATATGGATAGTTCAGAGAATACTGAGAACAAAGATGGCAAACATAGTCACATTGAAAGCAGGAAGAGCAACGAGAGGGAAACGATTCACATTGAAAGCAATGGCAGCGAAGAAAGAACACAGAGTTGCATTGAAAGCAAGAGCAACGAAGTTGATAAACAGAATCCAATTATGGCTAGTTTATCAAATGAAGATGAAACTAGCCTTATGAACATGGACGGTGTGCAGATGTACATCAAAACCAAAGATGGTGAAGGTAATGGTGAATATAAATTCAAGGGCAATGAGGAGAGCACCCAGACAAATATGAAAAATTTATCAGACAAAGGAGAAATTAGTGCCGCAAATGAGGACAGTGCAGAGAATAGCACCGTAAATAAACATATTGGATCTAATAGCTTTGAAGATGAAGATAATGAACAAAGGATACAGAATCCAAAAATGGAAACTAACTCTAATGCACAGCACAATGTTAACAACAAAGATATCGACGATGAAGATTTAGAAGAAAAACTACAACTTCAAGCTTCAAAAGTTCAACATTTATCTGATAAAGCTCATGTCATGGATGATAAAGGATATGCTATGGAGAGTGATGTCAGTGAAAGGCTGATATACAACCAATCCAGTTCATAA 2181 0.3994 MNPPTIDFKVDLNSERVEEEKMEGGSMLYCDLCDTEVVYKLAQMLLPGLATSCVDSTAGSFKTPGSVAVDLRKEMIIYITQRSETFVAESIVLDGGPNGEESDHPFDIISNFVDDFAISKRNLFTRVSGLLLTDMREDKIDDFMQEMELTGFWPLERRETIAEAILKNVDIKNEFHCAMKFRSVDDLAVHAFHCNFRPLFCENEGCNARLIAKHLEKHDSICPFKIIPCEQKCSDSIMRRAMDRHCITVCPMKLVDCPFHSLGCRSAIAQCVIEKHCADDVRSHLWHLLKGMYKQASGEDLQRRVQQIVQASPGSRLAEARDVRSLNFVVKDIEAKLGPFELGSAKKNSTETLTKNNGGKNVATNANGSEESSKTPDLINSSHQAEVSAEKKNSVETIANNNNGGNSVANAKGSGESTKAPDMGNSSNKAERSFEKKNIAETVAEYDDGRSSVTNTNGSEESTNALHMVNLYTTEVSADKKDSLDITTNEKGSEESTEALDMVDLLEKVEARGIIHMDSSENTENKDGKHSHIESRKSNERETIHIESNGSEERTQSCIESKSNEVDKQNPIMASLSNEDETSLMNMDGVQMYIKTKDGEGNGEYKFKGNEESTQTNMKNLSDKGEISAANEDSAENSTVNKHIGSNSFEDEDNEQRIQNPKMETNSNAQHNVNNKDIDDEDLEEKLQLQASKVQHLSDKAHVMDDKGYAMESDVSERLIYNQSSS* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0402 726 MobiDBLite consensus disorder prediction 515 571 - -
Amo06g0402 726 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 282 IPR013083 -
Amo06g0402 726 MobiDBLite consensus disorder prediction 625 684 - -
Amo06g0402 726 MobiDBLite consensus disorder prediction 515 549 - -
Amo06g0402 726 Pfam TRAF-type zinc finger 218 276 IPR001293 GO:0008270
Amo06g0402 726 MobiDBLite consensus disorder prediction 348 434 - -
Amo06g0402 726 ProSiteProfiles Zinc finger TRAF-type profile. 218 265 IPR001293 GO:0008270
Amo06g0402 726 MobiDBLite consensus disorder prediction 597 616 - -
Amo06g0402 726 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 1 457 IPR043211 -
Amo06g0402 726 SUPERFAMILY TRAF domain-like 183 235 - -
Amo06g0402 726 PANTHER NEUROFILAMENT HEAVY POLYPEPTIDE-LIKE 1 457 - -
Amo06g0402 726 MobiDBLite consensus disorder prediction 550 571 - -
Amo06g0402 726 MobiDBLite consensus disorder prediction 348 428 - -
Amo06g0402 726 MobiDBLite consensus disorder prediction 631 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0402 Amo-Chr6 5480739 5483921 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0402 - - ahf:112695902 1430.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g0402 06 5480739 5483921 Amo12g3174 12 120480212 120481786 PCT
Amo12g3174 12 120480212 120481786 Amo06g0402 06 5480739 5483921 PCT