Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0317 ATGGAAGGAGAACAACAAAGCAGTGGCATATTGAGGTCCATGGACGCGGAGCAACTCAGAGAGCATGCACATAAGATGGTTGATTTTATTGCTGACTACTACAAAACCATTGAGAGTTTCCCAGTTCTCAGCCAAGTTCAGCCAGGTTATCTTGAAAAGCTCTTACCGGATTCTGCTCCTGATTATCCTGAAACACTGGAGCATGTTTTGAATGATGTACAGGAAAAGATTTTGCCAGGGGTAACACATTGGCAAAGCCCCAATTATTTTGCATATTTTCCTTCCAACAGTAGCATTGCTGGATTTCTTGGAGAAATGCTCAGTGCTGGTTTCAACATTGTTGGTTTCAGCTGGATAACTTCTCCGGCCGCAACAGAACTCGAAACCATTGTTCTCGATTGGCTTGCTAAGGCACTTAAGCTGCCTCATGATTTCCATTCTACTGGGCAAGGTGGTGGAGTTATTCAAGGAACAGCGAGTGAAGCAGTACTAGTTGTCTTGTTGGCTGCTCGCGACAAGATCTTAAGGACGGTTGGAAAAGACGCTCTTCCTAAGCTCGTGACATACGCATCTGATCAAACACACTCTTCTCTACTAAAAGCCTGCCAGATAGGTGGACTTAATCCTGAGCTTTGCAGGTCACTAAAAACTGATGCTTCAACAAATTATGCGCTTTCTCCTGAAGTATTTTCTGAAGCAGTTTCAAGGGACATTGCTAGTGGTCTTATACCATTTTTCTTATGTGCTACTGTTGGTACAACTTCATCAACTGCTATTGATCCTCTACCTGAATTGGGGAAAATTGCTAAGGTCAAAAACATTTGGTTTCATGTTGATGCTGCTTATGCTGGAAGTGCTTGTTTATGTCCAGAGTATCAACACCATCTCAATGGTGTCGAAGAAGCAGATTCATTCAACATGAATGCGCATAAATGGCTCTTGACAAACTTTGACTGTTCACTACTTTGGGTCAAGGATAGAAGTGCTCTGATTCAATCACTATCTACCAACCCGGAGTATCTGAAAAACAAGGCCTCTCAAGGAAATATGGTCATAGATTACAAAGATTGGCAAATTCCCCTGGGGCGTCGCTTTAGATCGTTAAAACTGTGGATGGTGATGCGTCTCTACGGATTGGAAGGTCTGCGAAATCACACGAGGAACCACATTAATCTGGCTGCTTATTTTGAGGACCTTGTTGGTCAGGATCCAAGGTTCAAGGTTGTTACGCCTCGCACGTTCTCTTTAGTCTGCTTTCAGCTTTTGCCTCCGGCTAACACAGAAGATACTAATAAACTGAACCGTGATCTACTTGACTCGGTGAATTCAACAGGAAGTGTTTTCATAACACACACGGTTCTATCAGGTCAGTTCATTCTGCGTTTTGCAGTAGGAGCACCATTGACAGAACAGAGGCACGTCGACACAGCATGGCGAATTTTGCAAGAAAAGGCCACTGCTTTGCTTGGCAGTTTGTAG 1479 0.4361 MEGEQQSSGILRSMDAEQLREHAHKMVDFIADYYKTIESFPVLSQVQPGYLEKLLPDSAPDYPETLEHVLNDVQEKILPGVTHWQSPNYFAYFPSNSSIAGFLGEMLSAGFNIVGFSWITSPAATELETIVLDWLAKALKLPHDFHSTGQGGGVIQGTASEAVLVVLLAARDKILRTVGKDALPKLVTYASDQTHSSLLKACQIGGLNPELCRSLKTDASTNYALSPEVFSEAVSRDIASGLIPFFLCATVGTTSSTAIDPLPELGKIAKVKNIWFHVDAAYAGSACLCPEYQHHLNGVEEADSFNMNAHKWLLTNFDCSLLWVKDRSALIQSLSTNPEYLKNKASQGNMVIDYKDWQIPLGRRFRSLKLWMVMRLYGLEGLRNHTRNHINLAAYFEDLVGQDPRFKVVTPRTFSLVCFQLLPPANTEDTNKLNRDLLDSVNSTGSVFITHTVLSGQFILRFAVGAPLTEQRHVDTAWRILQEKATALLGSL* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0317 492 Pfam Pyridoxal-dependent decarboxylase conserved domain 48 421 IPR002129 GO:0016830|GO:0019752|GO:0030170
Amo06g0317 492 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 304 325 IPR021115 GO:0016831
Amo06g0317 492 PANTHER GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE 14 491 - -
Amo06g0317 492 Gene3D Aspartate Aminotransferase, domain 1 388 492 IPR015422 GO:0003824
Amo06g0317 492 PRINTS Aromatic-L-amino-acid decarboxylase signature 19 38 IPR010977 GO:0006520|GO:0016831
Amo06g0317 492 PRINTS Aromatic-L-amino-acid decarboxylase signature 42 59 IPR010977 GO:0006520|GO:0016831
Amo06g0317 492 PRINTS Aromatic-L-amino-acid decarboxylase signature 60 79 IPR010977 GO:0006520|GO:0016831
Amo06g0317 492 PRINTS Aromatic-L-amino-acid decarboxylase signature 86 105 IPR010977 GO:0006520|GO:0016831
Amo06g0317 492 PRINTS Aromatic-L-amino-acid decarboxylase signature 107 125 IPR010977 GO:0006520|GO:0016831
Amo06g0317 492 PRINTS Aromatic-L-amino-acid decarboxylase signature 126 145 IPR010977 GO:0006520|GO:0016831
Amo06g0317 492 PRINTS Aromatic-L-amino-acid decarboxylase signature 151 171 IPR010977 GO:0006520|GO:0016831
Amo06g0317 492 PRINTS Aromatic-L-amino-acid decarboxylase signature 360 375 IPR010977 GO:0006520|GO:0016831
Amo06g0317 492 PRINTS Aromatic-L-amino-acid decarboxylase signature 403 422 IPR010977 GO:0006520|GO:0016831
Amo06g0317 492 Gene3D - 9 94 - -
Amo06g0317 492 CDD DOPA_deC_like 89 483 - -
Amo06g0317 492 SUPERFAMILY PLP-dependent transferases 14 485 IPR015424 -
Amo06g0317 492 Gene3D - 95 387 IPR015421 GO:0003824
Amo06g0317 492 PANTHER BNAA07G00240D PROTEIN 14 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0317 Amo-Chr6 4623021 4626584 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0317 K01593 - gmx:100791074 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1537 16 28407257 28408136 Amo06g0317 06 4623021 4626584 hybridization