Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0308 ATGGGAGATAGTGAAACAGTAGTTGCCGAAGCACCTGCAGCTGAGACACATGCTGCTGCTGGGTTTGGTGACTCTGCCTCAAACCCTACTCAGGAAGCAGCTTCTACTGTTGCTGAGCCTGCTGCAGAGGCTGRTACTCAAGCCAATTCAGCTTATGCCTTAGGTTATTCGAATACTGGCGACGGGAATGCTTATGCTGGGGATCCTAATGCTATGCAACCAGAAGCCCAAACCAATTCAATGGAGGATTCCAAGCAAGGTACTGAAGCTCCAAGTGGGCTTGGAAGTGCAGCTACAGGCTCAAGTCAAGTAAATGGTGGTCCAGTGGGTGCAATAGCAAATGCAACAGGACTTGAAAATGGGAATGCATTAGGGAACACTGATGGATCGGCTGATGAGAAACAGCTTGRGGATGGTTATGCTGCCATGTCTGCTGAAGAAGATCGACTGTGGAATATTYTAAGAGCTAATTCTTCAGATTTTACGGCTTGGACTTCCTTGATCGAAGAGACAGAGAAGGTGGCCGAGGATAACATTCTGAAGATTCGAAGAGTTTATGATGCTTTTCTAGCTGAGTTTCCCTTATGTTATGGTTATTGGAAGAAATATGCTGATCATGAGGCACGGCTTGGCTCTGTCGATAAAGTTGTTGAAGTTTATGAACGTGCTGTTCAAGGTGTTACCTATTCAGTGGATATGTGGTTGCATTATTGCATATTTGCTATAYGCACGTATGGGGATCCAGACACTGTGCGTAGGCTTTTTGAACGAGGATTAGCTTATGTTGGYACAGATTATCTTTCTTTTCCTCTTTGGGACAAGTACATTGAATATGAGTACATGCAGCAAGACTGGGCRCGTCTTGCCAATATCTACACTAGAATATTAGAGAATCCAAATCAGCAACTGGATCGATATTTCAACAGCTTCAAGGAGTTAGCTGCAAATCGACCTCTTTCAGAGCTACAAACTGCTGATGAAGCTGCTGTAGTGGCAGGTGCTGCTTCAGAGGCTGCTGACCAAACTGTTGAGYGAGAGGTTCGTCCTGATGGTGCAGAAAATTCTCCTAAACCTGTAAGTGCTGGATTAACAGAAGCAGAAGAGTTGGAGAAGTATATCGCCATTAGAGAAGAGATGTATAAGAAAGCTAAAGAGTTCGATTCTAAGATCATTGGTTTTGAAACAGCTATCAGGAGGCCATACTTTCATGTACGGCCACTCAATGTTGGAGAGCTTGAAAATTGGCATAATTATCTGGATTTTATAGAGAGGGAAGGTGACTTAAGCAAGATTGTCAAGTTATATGAGKGGTGTGTCATTGCATGTGCCAATTACCCTGAGTACTGGATACGCTATATTTTGTGTATGGAAGCCAGTGGAAGTATGGATCTTGCAAATAATGTGCTTGCTCGGGCAACCCAAGTCTTTGTCAAGAGGCAACCTGAAATACATCTTTTTTCTGCTCGGTTTAAGGAGCAGTCTGGAGATATAGCTGGTGCTAGAGCTGCCTATCAACTTGTTCATACTGAAATTTCTCCTGGTCTTCTTGAAGCGATAATCAAGCARGCGAATATGGAACATCGACTGGGAAAGTTGGAGGATGCCTTCTCTTTGTATGAACAAGCCATTGCCATTGAAAAGGGAAAAGAACATTCCCAAACATTGCCGATGCTGTTTGCTCAATTTTCTCGATTCGTCTATTTGGCTTCTGGGAATGCAGAAAAGGCAAGACAGATTCTAGTTGAAGGGGTTGAGAATGTTATGATGTCGAAACCGCTACTTGAGGCTTTATTGCATTTTGAGGCTATTCAGCCCCCACCAAAGCGAGTTGATATGAACTATTTGGAGTCATTGGTAGTCAAATTTATAATGCCTAACCCTGAGAGTCCTGGTGTTGTAAGTGCAGCTGAGCGGGAGGAACTTTCTAGCATTTTTTTGGAGTTTTTGAATCTCTTTGGAGATGTCCAATCTATCAAGAGGTGTGAGGATAGGCATGCCAAATTGTTCTTGCCACACAGGAGCATGTCAGAGTTAAAAAAACGTCATGCTGAGGACTTTTTAGCTTCAGATAAAGCAAAAATGGCAAGATCTTATTCTGTTCCATCAGCTGCCCAATCTGCAGTGGGTGCATATCCAAATGCACAGAATCAGTGGGCTAATTATGGTGTACAACCTCAAGCTTGGCCACCAGCCACACAGGCACAACAGTGGCCTGCTGGCTACACTCAGCCGGCTTCATATGGGGCTTATGCTGGATATGGAGCTAACTATCCAAATTCTCAGGTGCCTGCATCAGTTCCACAAAATACTGCTTATGGAGCCTATCCAGCAGCATATCCGGTACAGCCGGCTGTTCCCCAGCAAAGTTATGCACAACCTGCAGCAGCTGTGGCTCCTGCAGCGGCTGTGGCTCCTGCACAGCAACCTGCTGCAGTTCCTCAAGCCTATTACGGGAGTTATTACTGA 2466 0.4448 MGDSETVVAEAPAAETHAAAGFGDSASNPTQEAASTVAEPAAEAXTQANSAYALGYSNTGDGNAYAGDPNAMQPEAQTNSMEDSKQGTEAPSGLGSAATGSSQVNGGPVGAIANATGLENGNALGNTDGSADEKQLXDGYAAMSAEEDRLWNILRANSSDFTAWTSLIEETEKVAEDNILKIRRVYDAFLAEFPLCYGYWKKYADHEARLGSVDKVVEVYERAVQGVTYSVDMWLHYCIFAIXTYGDPDTVRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWARLANIYTRILENPNQQLDRYFNSFKELAANRPLSELQTADEAAVVAGAASEAADQTVEXEVRPDGAENSPKPVSAGLTEAEELEKYIAIREEMYKKAKEFDSKIIGFETAIRRPYFHVRPLNVGELENWHNYLDFIEREGDLSKIVKLYEXCVIACANYPEYWIRYILCMEASGSMDLANNVLARATQVFVKRQPEIHLFSARFKEQSGDIAGARAAYQLVHTEISPGLLEAIIKQANMEHRLGKLEDAFSLYEQAIAIEKGKEHSQTLPMLFAQFSRFVYLASGNAEKARQILVEGVENVMMSKPLLEALLHFEAIQPPPKRVDMNYLESLVVKFIMPNPESPGVVSAAEREELSSIFLEFLNLFGDVQSIKRCEDRHAKLFLPHRSMSELKKRHAEDFLASDKAKMARSYSVPSAAQSAVGAYPNAQNQWANYGVQPQAWPPATQAQQWPAGYTQPASYGAYAGYGANYPNSQVPASVPQNTAYGAYPAAYPVQPAVPQQSYAQPAAAVAPAAAVAPAQQPAAVPQAYYGSYY* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0308 821 Gene3D Tetratricopeptide repeat domain 152 321 IPR011990 GO:0005515
Amo06g0308 821 MobiDBLite consensus disorder prediction 72 109 - -
Amo06g0308 821 MobiDBLite consensus disorder prediction 1 131 - -
Amo06g0308 821 Gene3D Tetratricopeptide repeat domain 406 707 IPR011990 GO:0005515
Amo06g0308 821 SUPERFAMILY TPR-like 370 673 IPR011990 GO:0005515
Amo06g0308 821 PANTHER PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 31 798 - -
Amo06g0308 821 PANTHER PRE-MRNA-PROCESSING FACTOR 39 31 798 - -
Amo06g0308 821 SUPERFAMILY TPR-like 154 321 IPR011990 GO:0005515
Amo06g0308 821 SMART hat_new_1 530 565 IPR003107 GO:0006396
Amo06g0308 821 SMART hat_new_1 246 281 IPR003107 GO:0006396
Amo06g0308 821 SMART hat_new_1 177 209 IPR003107 GO:0006396
Amo06g0308 821 SMART hat_new_1 283 316 IPR003107 GO:0006396
Amo06g0308 821 SMART hat_new_1 571 603 IPR003107 GO:0006396
Amo06g0308 821 SMART hat_new_1 426 458 IPR003107 GO:0006396
Amo06g0308 821 SMART hat_new_1 211 243 IPR003107 GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0308 Amo-Chr6 4525673 4533624 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0308 K13217 - gmx:100787373 1251.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1518 16 27898756 27900882 Amo06g0308 06 4525673 4533624 hybridization